miRNA display CGI


Results 81 - 91 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15697 3' -51.8 NC_004065.1 + 85175 0.68 0.988794
Target:  5'- aUGAACuGCGUCgUCGUCgucACGAaagcuaGGUCc -3'
miRNA:   3'- gGCUUG-CGCAGgAGCAGa--UGCU------UCAG- -5'
15697 3' -51.8 NC_004065.1 + 206784 0.68 0.98735
Target:  5'- uCCGAuuCGCGUCCgcgcuaucgcCGUCUgguGCGuGGUCu -3'
miRNA:   3'- -GGCUu-GCGCAGGa---------GCAGA---UGCuUCAG- -5'
15697 3' -51.8 NC_004065.1 + 115321 0.69 0.985766
Target:  5'- aCCGAGgcCGCGUCCUCGcgcGCGccGUUg -3'
miRNA:   3'- -GGCUU--GCGCAGGAGCagaUGCuuCAG- -5'
15697 3' -51.8 NC_004065.1 + 32170 0.69 0.98215
Target:  5'- aCG-GCGCGUCCcagaacgagGUCUGCGAgcuGGUCa -3'
miRNA:   3'- gGCuUGCGCAGGag-------CAGAUGCU---UCAG- -5'
15697 3' -51.8 NC_004065.1 + 197198 0.69 0.98215
Target:  5'- -gGAGCGUggacccggGUCUUCGUCUACGAGa-- -3'
miRNA:   3'- ggCUUGCG--------CAGGAGCAGAUGCUUcag -5'
15697 3' -51.8 NC_004065.1 + 28829 0.69 0.980101
Target:  5'- aCGAGgGUGUCC-CGUCgacgcgcACGAAGUg -3'
miRNA:   3'- gGCUUgCGCAGGaGCAGa------UGCUUCAg -5'
15697 3' -51.8 NC_004065.1 + 31017 0.69 0.980101
Target:  5'- gUCGAGCGCgGUCUUCaUCUACGAc--- -3'
miRNA:   3'- -GGCUUGCG-CAGGAGcAGAUGCUucag -5'
15697 3' -51.8 NC_004065.1 + 62018 0.69 0.977882
Target:  5'- gCCGAuucUGCGcCCUCGUCaACGAgaAGUg -3'
miRNA:   3'- -GGCUu--GCGCaGGAGCAGaUGCU--UCAg -5'
15697 3' -51.8 NC_004065.1 + 132679 0.7 0.975486
Target:  5'- gCUGAACGUGguaUCCUaCGUgUGCGAGGa- -3'
miRNA:   3'- -GGCUUGCGC---AGGA-GCAgAUGCUUCag -5'
15697 3' -51.8 NC_004065.1 + 153058 0.7 0.975486
Target:  5'- -aGAAauCGUCCUCGUCgucgGAGGUCa -3'
miRNA:   3'- ggCUUgcGCAGGAGCAGaug-CUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 41061 1.12 0.009227
Target:  5'- gCCGAACGCGUCCUCGUCUACGAAGUCu -3'
miRNA:   3'- -GGCUUGCGCAGGAGCAGAUGCUUCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.