miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15697 3' -51.8 NC_004065.1 + 41061 1.12 0.009227
Target:  5'- gCCGAACGCGUCCUCGUCUACGAAGUCu -3'
miRNA:   3'- -GGCUUGCGCAGGAGCAGAUGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 28829 0.69 0.980101
Target:  5'- aCGAGgGUGUCC-CGUCgacgcgcACGAAGUg -3'
miRNA:   3'- gGCUUgCGCAGGaGCAGa------UGCUUCAg -5'
15697 3' -51.8 NC_004065.1 + 32170 0.69 0.98215
Target:  5'- aCG-GCGCGUCCcagaacgagGUCUGCGAgcuGGUCa -3'
miRNA:   3'- gGCuUGCGCAGGag-------CAGAUGCU---UCAG- -5'
15697 3' -51.8 NC_004065.1 + 108761 0.66 0.998622
Target:  5'- gCCGAGC-CGUCgCggUCGUCgACGAGGa- -3'
miRNA:   3'- -GGCUUGcGCAG-G--AGCAGaUGCUUCag -5'
15697 3' -51.8 NC_004065.1 + 127747 0.73 0.908718
Target:  5'- aCGAcgcGCGCcuuGUCCUCGUCgguggcgcCGggGUCg -3'
miRNA:   3'- gGCU---UGCG---CAGGAGCAGau------GCuuCAG- -5'
15697 3' -51.8 NC_004065.1 + 159717 0.71 0.944927
Target:  5'- gCCGAACGCG-CCgaCGUCUcgcaaacaacgACGAcGUCg -3'
miRNA:   3'- -GGCUUGCGCaGGa-GCAGA-----------UGCUuCAG- -5'
15697 3' -51.8 NC_004065.1 + 132398 0.71 0.949182
Target:  5'- cCUGGGCGCGaUCCUgagCGUCUACGuGGa- -3'
miRNA:   3'- -GGCUUGCGC-AGGA---GCAGAUGCuUCag -5'
15697 3' -51.8 NC_004065.1 + 34438 0.7 0.963994
Target:  5'- cUCGAGCcCGUCCgaGUCUucCGAGGUCg -3'
miRNA:   3'- -GGCUUGcGCAGGagCAGAu-GCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 50514 0.7 0.972905
Target:  5'- cCCGAAUcggGCGUCUUCGagugcucCUACGAcGUCu -3'
miRNA:   3'- -GGCUUG---CGCAGGAGCa------GAUGCUuCAG- -5'
15697 3' -51.8 NC_004065.1 + 31017 0.69 0.980101
Target:  5'- gUCGAGCGCgGUCUUCaUCUACGAc--- -3'
miRNA:   3'- -GGCUUGCG-CAGGAGcAGAUGCUucag -5'
15697 3' -51.8 NC_004065.1 + 153058 0.7 0.975486
Target:  5'- -aGAAauCGUCCUCGUCgucgGAGGUCa -3'
miRNA:   3'- ggCUUgcGCAGGAGCAGaug-CUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 78533 0.7 0.972905
Target:  5'- gCUGAguuGCGUCUUCGUCU-UGAAGUUa -3'
miRNA:   3'- -GGCUug-CGCAGGAGCAGAuGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 102542 0.74 0.876034
Target:  5'- cUCG-ACGCGUCCUCGUCcgaGAGGg- -3'
miRNA:   3'- -GGCuUGCGCAGGAGCAGaugCUUCag -5'
15697 3' -51.8 NC_004065.1 + 132679 0.7 0.975486
Target:  5'- gCUGAACGUGguaUCCUaCGUgUGCGAGGa- -3'
miRNA:   3'- -GGCUUGCGC---AGGA-GCAgAUGCUUCag -5'
15697 3' -51.8 NC_004065.1 + 122371 0.74 0.876034
Target:  5'- uCCGAGCagcccGCGuUCCUgGUCUGCGAcguGUCc -3'
miRNA:   3'- -GGCUUG-----CGC-AGGAgCAGAUGCUu--CAG- -5'
15697 3' -51.8 NC_004065.1 + 208290 0.7 0.967165
Target:  5'- uCUGAGCGUG-CUgCGUCguaACGAGGUCu -3'
miRNA:   3'- -GGCUUGCGCaGGaGCAGa--UGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 62018 0.69 0.977882
Target:  5'- gCCGAuucUGCGcCCUCGUCaACGAgaAGUg -3'
miRNA:   3'- -GGCUu--GCGCaGGAGCAGaUGCU--UCAg -5'
15697 3' -51.8 NC_004065.1 + 197198 0.69 0.98215
Target:  5'- -gGAGCGUggacccggGUCUUCGUCUACGAGa-- -3'
miRNA:   3'- ggCUUGCG--------CAGGAGCAGAUGCUUcag -5'
15697 3' -51.8 NC_004065.1 + 175754 0.73 0.902626
Target:  5'- gCGGACGCGUUCU-GUCUACuGAcGGUCc -3'
miRNA:   3'- gGCUUGCGCAGGAgCAGAUG-CU-UCAG- -5'
15697 3' -51.8 NC_004065.1 + 176399 0.71 0.949182
Target:  5'- aCGGACGC-UCCUCGUC--CGAAGa- -3'
miRNA:   3'- gGCUUGCGcAGGAGCAGauGCUUCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.