miRNA display CGI


Results 61 - 80 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15697 3' -51.8 NC_004065.1 + 159444 0.7 0.972905
Target:  5'- uCCGAucgACGuCGUCgUUGUUUGCGAGacGUCg -3'
miRNA:   3'- -GGCU---UGC-GCAGgAGCAGAUGCUU--CAG- -5'
15697 3' -51.8 NC_004065.1 + 224884 0.71 0.957022
Target:  5'- uCCGGACGCGUacaCGUCcACGguGUCg -3'
miRNA:   3'- -GGCUUGCGCAggaGCAGaUGCuuCAG- -5'
15697 3' -51.8 NC_004065.1 + 81413 0.71 0.944927
Target:  5'- cCCGGGCcCGUcCCUCGUCcccgGCGGAGa- -3'
miRNA:   3'- -GGCUUGcGCA-GGAGCAGa---UGCUUCag -5'
15697 3' -51.8 NC_004065.1 + 143521 0.72 0.940444
Target:  5'- gUGAGCaGCGUCCUCGacgUCUGgGAGGg- -3'
miRNA:   3'- gGCUUG-CGCAGGAGC---AGAUgCUUCag -5'
15697 3' -51.8 NC_004065.1 + 30818 0.72 0.940444
Target:  5'- aCCGucgcgguGCGCGUCCUCGcgacccUCgACGAAGcCg -3'
miRNA:   3'- -GGCu------UGCGCAGGAGC------AGaUGCUUCaG- -5'
15697 3' -51.8 NC_004065.1 + 89056 0.67 0.993692
Target:  5'- uUGGGCGCGUCCUUGaggagacaggggaaCUGCGAguGGUUc -3'
miRNA:   3'- gGCUUGCGCAGGAGCa-------------GAUGCU--UCAG- -5'
15697 3' -51.8 NC_004065.1 + 30519 0.67 0.994199
Target:  5'- uCCGGGgGCGUUC-CGaaaACGAAGUCg -3'
miRNA:   3'- -GGCUUgCGCAGGaGCagaUGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 121473 0.66 0.998354
Target:  5'- gUCGGucgGCGCGUCCgcgggCGUgaaggugGCGAAGUUc -3'
miRNA:   3'- -GGCU---UGCGCAGGa----GCAga-----UGCUUCAG- -5'
15697 3' -51.8 NC_004065.1 + 78024 0.66 0.998354
Target:  5'- gCUGAGCGCGcugaccuaCCUgGUCcUGCGucAGGUCg -3'
miRNA:   3'- -GGCUUGCGCa-------GGAgCAG-AUGC--UUCAG- -5'
15697 3' -51.8 NC_004065.1 + 44797 0.66 0.998354
Target:  5'- uCCG-ACGUGUCCUCcgaUACGGAuUCu -3'
miRNA:   3'- -GGCuUGCGCAGGAGcagAUGCUUcAG- -5'
15697 3' -51.8 NC_004065.1 + 40819 0.66 0.998354
Target:  5'- -aGGACGCGUUCggccgCGUCccugACGuuGUCc -3'
miRNA:   3'- ggCUUGCGCAGGa----GCAGa---UGCuuCAG- -5'
15697 3' -51.8 NC_004065.1 + 104134 0.66 0.998236
Target:  5'- gCGAGCGgaUCCUCGUCgucgccuuccgcgGCGguGUCg -3'
miRNA:   3'- gGCUUGCgcAGGAGCAGa------------UGCuuCAG- -5'
15697 3' -51.8 NC_004065.1 + 210711 0.66 0.998044
Target:  5'- cCCGAGCGUuucgacGcCUUUGUCUACGGuguaacguGUCa -3'
miRNA:   3'- -GGCUUGCG------CaGGAGCAGAUGCUu-------CAG- -5'
15697 3' -51.8 NC_004065.1 + 200633 0.67 0.996266
Target:  5'- aCCGAugGCGUCgcgCUCGag-GCGAGaUCg -3'
miRNA:   3'- -GGCUugCGCAG---GAGCagaUGCUUcAG- -5'
15697 3' -51.8 NC_004065.1 + 107078 0.67 0.995658
Target:  5'- gUGAGCuGCaUCCUCGUCUGgaacgcCGgcGUCg -3'
miRNA:   3'- gGCUUG-CGcAGGAGCAGAU------GCuuCAG- -5'
15697 3' -51.8 NC_004065.1 + 61692 0.67 0.995658
Target:  5'- uCCGcAGCGCGUCa-CGUCcGCGgcGUa -3'
miRNA:   3'- -GGC-UUGCGCAGgaGCAGaUGCuuCAg -5'
15697 3' -51.8 NC_004065.1 + 229424 0.67 0.994971
Target:  5'- cCUGAGCGCGUaaCUgGUCUgccaccACGggGUg -3'
miRNA:   3'- -GGCUUGCGCAg-GAgCAGA------UGCuuCAg -5'
15697 3' -51.8 NC_004065.1 + 122512 0.67 0.994971
Target:  5'- gCCGcGCGCaccUCCUCGU--GCGAgcGGUCg -3'
miRNA:   3'- -GGCuUGCGc--AGGAGCAgaUGCU--UCAG- -5'
15697 3' -51.8 NC_004065.1 + 78196 0.67 0.994199
Target:  5'- aCGAACGCGUaCC-CGUC-GCGc-GUCg -3'
miRNA:   3'- gGCUUGCGCA-GGaGCAGaUGCuuCAG- -5'
15697 3' -51.8 NC_004065.1 + 31250 0.67 0.994199
Target:  5'- gCGAcCGUGUCCgaUCGUCUcUGcGGUCg -3'
miRNA:   3'- gGCUuGCGCAGG--AGCAGAuGCuUCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.