miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15697 5' -52.7 NC_004065.1 + 34781 0.66 0.996961
Target:  5'- --aGCCCgCcCGGCGAAGAUagaagaacacCCGUCCg -3'
miRNA:   3'- cccUGGGaGaGUUGCUUCUA----------GGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 61346 0.66 0.996961
Target:  5'- cGGcGACCCgggCgaaGACGGAGAugggggucuccUCgCGUCCc -3'
miRNA:   3'- -CC-CUGGGa--Gag-UUGCUUCU-----------AG-GCAGG- -5'
15697 5' -52.7 NC_004065.1 + 130751 0.66 0.996961
Target:  5'- aGGACgCgcggCUCGAUGAGcaucuccauGGUgCCGUCCg -3'
miRNA:   3'- cCCUGgGa---GAGUUGCUU---------CUA-GGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 53345 0.66 0.996815
Target:  5'- cGGugCUaCUCAucuuuuaguccgcgGCGAAGAcgCCGUUCg -3'
miRNA:   3'- cCCugGGaGAGU--------------UGCUUCUa-GGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 88359 0.66 0.996815
Target:  5'- uGGGACCgCUCUCGuccGCGGccgcGGcaccgccaccgcccUCCGUCg -3'
miRNA:   3'- -CCCUGG-GAGAGU---UGCUu---CU--------------AGGCAGg -5'
15697 5' -52.7 NC_004065.1 + 188580 0.66 0.996504
Target:  5'- aGGACgCUCUCcACGGccagcaccccgucucGGUCCGUCa -3'
miRNA:   3'- cCCUGgGAGAGuUGCUu--------------CUAGGCAGg -5'
15697 5' -52.7 NC_004065.1 + 134436 0.66 0.99645
Target:  5'- -aGGCCCgUCUUGAUGcAGAcggagCCGUCCu -3'
miRNA:   3'- ccCUGGG-AGAGUUGCuUCUa----GGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 122029 0.66 0.99645
Target:  5'- gGGGGCgCUCUUcucUGucuGUCCGUCCg -3'
miRNA:   3'- -CCCUGgGAGAGuu-GCuucUAGGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 191610 0.66 0.99645
Target:  5'- -aGACgCCUCUCccGCGAAG-UCCGugUCCc -3'
miRNA:   3'- ccCUG-GGAGAGu-UGCUUCuAGGC--AGG- -5'
15697 5' -52.7 NC_004065.1 + 28846 0.66 0.99587
Target:  5'- gGGGAUCUgUCUggaaGACGAGGGUgucCCGUCg -3'
miRNA:   3'- -CCCUGGG-AGAg---UUGCUUCUA---GGCAGg -5'
15697 5' -52.7 NC_004065.1 + 113851 0.66 0.995215
Target:  5'- cGGGACCgCgggCGACGAguuuGGAUuuGcCCg -3'
miRNA:   3'- -CCCUGG-GagaGUUGCU----UCUAggCaGG- -5'
15697 5' -52.7 NC_004065.1 + 61586 0.66 0.995215
Target:  5'- uGGACgCCgUCUCGACGuaacauucggcGAGAUCCagGUCg -3'
miRNA:   3'- cCCUG-GG-AGAGUUGC-----------UUCUAGG--CAGg -5'
15697 5' -52.7 NC_004065.1 + 31644 0.66 0.995215
Target:  5'- aGGGuCCCggcCGA-GAGGAUCCG-CCg -3'
miRNA:   3'- -CCCuGGGagaGUUgCUUCUAGGCaGG- -5'
15697 5' -52.7 NC_004065.1 + 36531 0.66 0.994478
Target:  5'- -cGACCUUCaugUCGcuaACGGGcAUCCGUCCg -3'
miRNA:   3'- ccCUGGGAG---AGU---UGCUUcUAGGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 97850 0.66 0.993652
Target:  5'- cGGcGGCCUccUUCGACGuguuGcgCCGUCCg -3'
miRNA:   3'- -CC-CUGGGa-GAGUUGCuu--CuaGGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 47537 0.67 0.99273
Target:  5'- cGGGGCCaccgacacgUCGGCGAacAGAUCC-UCCu -3'
miRNA:   3'- -CCCUGGgag------AGUUGCU--UCUAGGcAGG- -5'
15697 5' -52.7 NC_004065.1 + 202548 0.67 0.991703
Target:  5'- uGGGAUCCgggaccgUGACGAucGGA-CCGUCCc -3'
miRNA:   3'- -CCCUGGGaga----GUUGCU--UCUaGGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 127473 0.67 0.991703
Target:  5'- cGGGACCCgaccccggCgccacCGACGAGGAcaaggcgcgcgUCGUCCu -3'
miRNA:   3'- -CCCUGGGa-------Ga----GUUGCUUCUa----------GGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 167638 0.67 0.991703
Target:  5'- cGGGAUgCUCgUCGGCG-GGAcggCCGUaCCg -3'
miRNA:   3'- -CCCUGgGAG-AGUUGCuUCUa--GGCA-GG- -5'
15697 5' -52.7 NC_004065.1 + 53638 0.67 0.991595
Target:  5'- gGGGACCCUCacucuugcaUCuggcgugguggagGACGGAGAg-CGUCUu -3'
miRNA:   3'- -CCCUGGGAG---------AG-------------UUGCUUCUagGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.