Results 61 - 66 of 66 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 15697 | 5' | -52.7 | NC_004065.1 | + | 189849 | 0.72 | 0.899753 |
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Target: 5'- cGGGACCUgCUCGucgccGCGAGGGguuugcugCCGUCg -3' miRNA: 3'- -CCCUGGGaGAGU-----UGCUUCUa-------GGCAGg -5' |
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| 15697 | 5' | -52.7 | NC_004065.1 | + | 111680 | 0.74 | 0.809841 |
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Target: 5'- cGGGGCCCugcaUCUCAcagACGggGAggaaUCCGgCCc -3' miRNA: 3'- -CCCUGGG----AGAGU---UGCuuCU----AGGCaGG- -5' |
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| 15697 | 5' | -52.7 | NC_004065.1 | + | 191289 | 0.75 | 0.765181 |
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Target: 5'- cGGGGCCCUCUCugaGGCGGAGcaggauggugCCGgCCg -3' miRNA: 3'- -CCCUGGGAGAG---UUGCUUCua--------GGCaGG- -5' |
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| 15697 | 5' | -52.7 | NC_004065.1 | + | 152745 | 0.77 | 0.648532 |
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Target: 5'- gGGGGUCCUCUCGAUGAAGAg--GUCCu -3' miRNA: 3'- -CCCUGGGAGAGUUGCUUCUaggCAGG- -5' |
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| 15697 | 5' | -52.7 | NC_004065.1 | + | 18152 | 0.79 | 0.549209 |
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Target: 5'- aGGcGACaguCUCUCGACGGGcGUCCGUCCg -3' miRNA: 3'- -CC-CUGg--GAGAGUUGCUUcUAGGCAGG- -5' |
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| 15697 | 5' | -52.7 | NC_004065.1 | + | 41025 | 1.16 | 0.00442 |
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Target: 5'- aGGGACCCUCUCAACGAAGAUCCGUCCg -3' miRNA: 3'- -CCCUGGGAGAGUUGCUUCUAGGCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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