miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15697 5' -52.7 NC_004065.1 + 41025 1.16 0.00442
Target:  5'- aGGGACCCUCUCAACGAAGAUCCGUCCg -3'
miRNA:   3'- -CCCUGGGAGAGUUGCUUCUAGGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 18152 0.79 0.549209
Target:  5'- aGGcGACaguCUCUCGACGGGcGUCCGUCCg -3'
miRNA:   3'- -CC-CUGg--GAGAGUUGCUUcUAGGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 152745 0.77 0.648532
Target:  5'- gGGGGUCCUCUCGAUGAAGAg--GUCCu -3'
miRNA:   3'- -CCCUGGGAGAGUUGCUUCUaggCAGG- -5'
15697 5' -52.7 NC_004065.1 + 191289 0.75 0.765181
Target:  5'- cGGGGCCCUCUCugaGGCGGAGcaggauggugCCGgCCg -3'
miRNA:   3'- -CCCUGGGAGAG---UUGCUUCua--------GGCaGG- -5'
15697 5' -52.7 NC_004065.1 + 111680 0.74 0.809841
Target:  5'- cGGGGCCCugcaUCUCAcagACGggGAggaaUCCGgCCc -3'
miRNA:   3'- -CCCUGGG----AGAGU---UGCuuCU----AGGCaGG- -5'
15697 5' -52.7 NC_004065.1 + 113904 0.72 0.885433
Target:  5'- gGGGaACCCggcgcugagauaCUCGACGAcgGGGUCCGcuUCCa -3'
miRNA:   3'- -CCC-UGGGa-----------GAGUUGCU--UCUAGGC--AGG- -5'
15697 5' -52.7 NC_004065.1 + 167036 0.72 0.893375
Target:  5'- cGGACCCguauagguUCUCGACGAuGAUCagGUUCa -3'
miRNA:   3'- cCCUGGG--------AGAGUUGCUuCUAGg-CAGG- -5'
15697 5' -52.7 NC_004065.1 + 198737 0.72 0.911843
Target:  5'- --aACCCUCgcgugUCGuacggguCGGAGGUCCGUCCg -3'
miRNA:   3'- cccUGGGAG-----AGUu------GCUUCUAGGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 189849 0.72 0.899753
Target:  5'- cGGGACCUgCUCGucgccGCGAGGGguuugcugCCGUCg -3'
miRNA:   3'- -CCCUGGGaGAGU-----UGCUUCUa-------GGCAGg -5'
15697 5' -52.7 NC_004065.1 + 7184 0.71 0.933304
Target:  5'- uGGGCCgUCUUggUGGAGGUUUagGUCCg -3'
miRNA:   3'- cCCUGGgAGAGuuGCUUCUAGG--CAGG- -5'
15697 5' -52.7 NC_004065.1 + 120579 0.71 0.916989
Target:  5'- cGGGACCUccggcgccggUCUCGgccgggugcACGAGGAUCgaguagcucguggCGUCCg -3'
miRNA:   3'- -CCCUGGG----------AGAGU---------UGCUUCUAG-------------GCAGG- -5'
15697 5' -52.7 NC_004065.1 + 162141 0.71 0.938099
Target:  5'- cGGACCUgaaaaCGGgGAAGGUCCGUCa -3'
miRNA:   3'- cCCUGGGaga--GUUgCUUCUAGGCAGg -5'
15697 5' -52.7 NC_004065.1 + 102278 0.71 0.938099
Target:  5'- gGGGAguucaCCCUCUCgGACGAGGAcagCGUCg -3'
miRNA:   3'- -CCCU-----GGGAGAG-UUGCUUCUag-GCAGg -5'
15697 5' -52.7 NC_004065.1 + 55857 0.71 0.938099
Target:  5'- cGGAUCCUCcguauagucgaUCGGCGucGAUCggCGUCCa -3'
miRNA:   3'- cCCUGGGAG-----------AGUUGCuuCUAG--GCAGG- -5'
15697 5' -52.7 NC_004065.1 + 146711 0.71 0.933304
Target:  5'- gGGcGACgCCgcgCUCGACGAcgAGAgcUCCGUCg -3'
miRNA:   3'- -CC-CUG-GGa--GAGUUGCU--UCU--AGGCAGg -5'
15697 5' -52.7 NC_004065.1 + 114997 0.71 0.92828
Target:  5'- aGGGCgaCUCUCAACGA-GAUCCG-Ca -3'
miRNA:   3'- cCCUGg-GAGAGUUGCUuCUAGGCaGg -5'
15697 5' -52.7 NC_004065.1 + 34106 0.7 0.955032
Target:  5'- gGGGGCUC-CUCAG-GGAGAUCgaguuCGUCCc -3'
miRNA:   3'- -CCCUGGGaGAGUUgCUUCUAG-----GCAGG- -5'
15697 5' -52.7 NC_004065.1 + 221673 0.7 0.963517
Target:  5'- cGGGACCCagUCUCucuuugucaccgcCGGAucgcGAUCCGUUCg -3'
miRNA:   3'- -CCCUGGG--AGAGuu-----------GCUU----CUAGGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 107910 0.7 0.951131
Target:  5'- cGGuGAUCUUCUCcAUGAAGGUaCCGUgCa -3'
miRNA:   3'- -CC-CUGGGAGAGuUGCUUCUA-GGCAgG- -5'
15697 5' -52.7 NC_004065.1 + 211011 0.69 0.976528
Target:  5'- cGGACCUUCUCuguACGA-GAUgaacgucgCCGUCa -3'
miRNA:   3'- cCCUGGGAGAGu--UGCUuCUA--------GGCAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.