miRNA display CGI


Results 41 - 60 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15697 5' -52.7 NC_004065.1 + 33578 0.67 0.987925
Target:  5'- cGGGAUCCgcCUCuuCGAGGAgaauuaCGUUCg -3'
miRNA:   3'- -CCCUGGGa-GAGuuGCUUCUag----GCAGG- -5'
15697 5' -52.7 NC_004065.1 + 143431 0.67 0.989309
Target:  5'- gGGGGCCg-CUCGGCGGacaGGAUgaaGUCCu -3'
miRNA:   3'- -CCCUGGgaGAGUUGCU---UCUAgg-CAGG- -5'
15697 5' -52.7 NC_004065.1 + 39815 0.67 0.989309
Target:  5'- cGGGGuuCUCgcgGACGAAGA--CGUCCa -3'
miRNA:   3'- -CCCUggGAGag-UUGCUUCUagGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 37186 0.67 0.989309
Target:  5'- cGGGACCUggaUCUCucccuCGAGGAUgUCGUgCu -3'
miRNA:   3'- -CCCUGGG---AGAGuu---GCUUCUA-GGCAgG- -5'
15697 5' -52.7 NC_004065.1 + 147571 0.67 0.987925
Target:  5'- gGGuGACCCUCga---GAAGGUCaucauCGUCCu -3'
miRNA:   3'- -CC-CUGGGAGaguugCUUCUAG-----GCAGG- -5'
15697 5' -52.7 NC_004065.1 + 167638 0.67 0.991703
Target:  5'- cGGGAUgCUCgUCGGCG-GGAcggCCGUaCCg -3'
miRNA:   3'- -CCCUGgGAG-AGUUGCuUCUa--GGCA-GG- -5'
15697 5' -52.7 NC_004065.1 + 174677 0.67 0.987925
Target:  5'- cGGGACCUcguUCUC--CGucGGGUCCGugUCCg -3'
miRNA:   3'- -CCCUGGG---AGAGuuGCu-UCUAGGC--AGG- -5'
15697 5' -52.7 NC_004065.1 + 110375 0.67 0.987925
Target:  5'- uGGGA-CCUCUC-GCGcAGG-CCGUUCg -3'
miRNA:   3'- -CCCUgGGAGAGuUGCuUCUaGGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 106215 0.67 0.989309
Target:  5'- aGGACCUcuaugCUCGggaugugcaugAUGGAGGucagUCCGUCCa -3'
miRNA:   3'- cCCUGGGa----GAGU-----------UGCUUCU----AGGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 127473 0.67 0.991703
Target:  5'- cGGGACCCgaccccggCgccacCGACGAGGAcaaggcgcgcgUCGUCCu -3'
miRNA:   3'- -CCCUGGGa-------Ga----GUUGCUUCUa----------GGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 202548 0.67 0.991703
Target:  5'- uGGGAUCCgggaccgUGACGAucGGA-CCGUCCc -3'
miRNA:   3'- -CCCUGGGaga----GUUGCU--UCUaGGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 88359 0.66 0.996815
Target:  5'- uGGGACCgCUCUCGuccGCGGccgcGGcaccgccaccgcccUCCGUCg -3'
miRNA:   3'- -CCCUGG-GAGAGU---UGCUu---CU--------------AGGCAGg -5'
15697 5' -52.7 NC_004065.1 + 97850 0.66 0.993652
Target:  5'- cGGcGGCCUccUUCGACGuguuGcgCCGUCCg -3'
miRNA:   3'- -CC-CUGGGa-GAGUUGCuu--CuaGGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 130751 0.66 0.996961
Target:  5'- aGGACgCgcggCUCGAUGAGcaucuccauGGUgCCGUCCg -3'
miRNA:   3'- cCCUGgGa---GAGUUGCUU---------CUA-GGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 61586 0.66 0.995215
Target:  5'- uGGACgCCgUCUCGACGuaacauucggcGAGAUCCagGUCg -3'
miRNA:   3'- cCCUG-GG-AGAGUUGC-----------UUCUAGG--CAGg -5'
15697 5' -52.7 NC_004065.1 + 122029 0.66 0.99645
Target:  5'- gGGGGCgCUCUUcucUGucuGUCCGUCCg -3'
miRNA:   3'- -CCCUGgGAGAGuu-GCuucUAGGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 191610 0.66 0.99645
Target:  5'- -aGACgCCUCUCccGCGAAG-UCCGugUCCc -3'
miRNA:   3'- ccCUG-GGAGAGu-UGCUUCuAGGC--AGG- -5'
15697 5' -52.7 NC_004065.1 + 188580 0.66 0.996504
Target:  5'- aGGACgCUCUCcACGGccagcaccccgucucGGUCCGUCa -3'
miRNA:   3'- cCCUGgGAGAGuUGCUu--------------CUAGGCAGg -5'
15697 5' -52.7 NC_004065.1 + 34781 0.66 0.996961
Target:  5'- --aGCCCgCcCGGCGAAGAUagaagaacacCCGUCCg -3'
miRNA:   3'- cccUGGGaGaGUUGCUUCUA----------GGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 61346 0.66 0.996961
Target:  5'- cGGcGACCCgggCgaaGACGGAGAugggggucuccUCgCGUCCc -3'
miRNA:   3'- -CC-CUGGGa--Gag-UUGCUUCU-----------AG-GCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.