Results 61 - 66 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15697 | 5' | -52.7 | NC_004065.1 | + | 34781 | 0.66 | 0.996961 |
Target: 5'- --aGCCCgCcCGGCGAAGAUagaagaacacCCGUCCg -3' miRNA: 3'- cccUGGGaGaGUUGCUUCUA----------GGCAGG- -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 88359 | 0.66 | 0.996815 |
Target: 5'- uGGGACCgCUCUCGuccGCGGccgcGGcaccgccaccgcccUCCGUCg -3' miRNA: 3'- -CCCUGG-GAGAGU---UGCUu---CU--------------AGGCAGg -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 188580 | 0.66 | 0.996504 |
Target: 5'- aGGACgCUCUCcACGGccagcaccccgucucGGUCCGUCa -3' miRNA: 3'- cCCUGgGAGAGuUGCUu--------------CUAGGCAGg -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 191610 | 0.66 | 0.99645 |
Target: 5'- -aGACgCCUCUCccGCGAAG-UCCGugUCCc -3' miRNA: 3'- ccCUG-GGAGAGu-UGCUUCuAGGC--AGG- -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 61586 | 0.66 | 0.995215 |
Target: 5'- uGGACgCCgUCUCGACGuaacauucggcGAGAUCCagGUCg -3' miRNA: 3'- cCCUG-GG-AGAGUUGC-----------UUCUAGG--CAGg -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 130751 | 0.66 | 0.996961 |
Target: 5'- aGGACgCgcggCUCGAUGAGcaucuccauGGUgCCGUCCg -3' miRNA: 3'- cCCUGgGa---GAGUUGCUU---------CUA-GGCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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