Results 1 - 20 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15697 | 5' | -52.7 | NC_004065.1 | + | 41025 | 1.16 | 0.00442 |
Target: 5'- aGGGACCCUCUCAACGAAGAUCCGUCCg -3' miRNA: 3'- -CCCUGGGAGAGUUGCUUCUAGGCAGG- -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 18152 | 0.79 | 0.549209 |
Target: 5'- aGGcGACaguCUCUCGACGGGcGUCCGUCCg -3' miRNA: 3'- -CC-CUGg--GAGAGUUGCUUcUAGGCAGG- -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 152745 | 0.77 | 0.648532 |
Target: 5'- gGGGGUCCUCUCGAUGAAGAg--GUCCu -3' miRNA: 3'- -CCCUGGGAGAGUUGCUUCUaggCAGG- -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 191289 | 0.75 | 0.765181 |
Target: 5'- cGGGGCCCUCUCugaGGCGGAGcaggauggugCCGgCCg -3' miRNA: 3'- -CCCUGGGAGAG---UUGCUUCua--------GGCaGG- -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 111680 | 0.74 | 0.809841 |
Target: 5'- cGGGGCCCugcaUCUCAcagACGggGAggaaUCCGgCCc -3' miRNA: 3'- -CCCUGGG----AGAGU---UGCuuCU----AGGCaGG- -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 113904 | 0.72 | 0.885433 |
Target: 5'- gGGGaACCCggcgcugagauaCUCGACGAcgGGGUCCGcuUCCa -3' miRNA: 3'- -CCC-UGGGa-----------GAGUUGCU--UCUAGGC--AGG- -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 167036 | 0.72 | 0.893375 |
Target: 5'- cGGACCCguauagguUCUCGACGAuGAUCagGUUCa -3' miRNA: 3'- cCCUGGG--------AGAGUUGCUuCUAGg-CAGG- -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 189849 | 0.72 | 0.899753 |
Target: 5'- cGGGACCUgCUCGucgccGCGAGGGguuugcugCCGUCg -3' miRNA: 3'- -CCCUGGGaGAGU-----UGCUUCUa-------GGCAGg -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 198737 | 0.72 | 0.911843 |
Target: 5'- --aACCCUCgcgugUCGuacggguCGGAGGUCCGUCCg -3' miRNA: 3'- cccUGGGAG-----AGUu------GCUUCUAGGCAGG- -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 120579 | 0.71 | 0.916989 |
Target: 5'- cGGGACCUccggcgccggUCUCGgccgggugcACGAGGAUCgaguagcucguggCGUCCg -3' miRNA: 3'- -CCCUGGG----------AGAGU---------UGCUUCUAG-------------GCAGG- -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 114997 | 0.71 | 0.92828 |
Target: 5'- aGGGCgaCUCUCAACGA-GAUCCG-Ca -3' miRNA: 3'- cCCUGg-GAGAGUUGCUuCUAGGCaGg -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 7184 | 0.71 | 0.933304 |
Target: 5'- uGGGCCgUCUUggUGGAGGUUUagGUCCg -3' miRNA: 3'- cCCUGGgAGAGuuGCUUCUAGG--CAGG- -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 146711 | 0.71 | 0.933304 |
Target: 5'- gGGcGACgCCgcgCUCGACGAcgAGAgcUCCGUCg -3' miRNA: 3'- -CC-CUG-GGa--GAGUUGCU--UCU--AGGCAGg -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 162141 | 0.71 | 0.938099 |
Target: 5'- cGGACCUgaaaaCGGgGAAGGUCCGUCa -3' miRNA: 3'- cCCUGGGaga--GUUgCUUCUAGGCAGg -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 102278 | 0.71 | 0.938099 |
Target: 5'- gGGGAguucaCCCUCUCgGACGAGGAcagCGUCg -3' miRNA: 3'- -CCCU-----GGGAGAG-UUGCUUCUag-GCAGg -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 55857 | 0.71 | 0.938099 |
Target: 5'- cGGAUCCUCcguauagucgaUCGGCGucGAUCggCGUCCa -3' miRNA: 3'- cCCUGGGAG-----------AGUUGCuuCUAG--GCAGG- -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 107910 | 0.7 | 0.951131 |
Target: 5'- cGGuGAUCUUCUCcAUGAAGGUaCCGUgCa -3' miRNA: 3'- -CC-CUGGGAGAGuUGCUUCUA-GGCAgG- -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 34106 | 0.7 | 0.955032 |
Target: 5'- gGGGGCUC-CUCAG-GGAGAUCgaguuCGUCCc -3' miRNA: 3'- -CCCUGGGaGAGUUgCUUCUAG-----GCAGG- -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 221673 | 0.7 | 0.963517 |
Target: 5'- cGGGACCCagUCUCucuuugucaccgcCGGAucgcGAUCCGUUCg -3' miRNA: 3'- -CCCUGGG--AGAGuu-----------GCUU----CUAGGCAGG- -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 145994 | 0.69 | 0.96545 |
Target: 5'- cGGACgCCgUCUCGaucgagaccaguACGgcGAUCCaGUCCa -3' miRNA: 3'- cCCUG-GG-AGAGU------------UGCuuCUAGG-CAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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