Results 41 - 60 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15697 | 5' | -52.7 | NC_004065.1 | + | 143431 | 0.67 | 0.989309 |
Target: 5'- gGGGGCCg-CUCGGCGGacaGGAUgaaGUCCu -3' miRNA: 3'- -CCCUGGgaGAGUUGCU---UCUAgg-CAGG- -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 37186 | 0.67 | 0.989309 |
Target: 5'- cGGGACCUggaUCUCucccuCGAGGAUgUCGUgCu -3' miRNA: 3'- -CCCUGGG---AGAGuu---GCUUCUA-GGCAgG- -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 106215 | 0.67 | 0.989309 |
Target: 5'- aGGACCUcuaugCUCGggaugugcaugAUGGAGGucagUCCGUCCa -3' miRNA: 3'- cCCUGGGa----GAGU-----------UGCUUCU----AGGCAGG- -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 39815 | 0.67 | 0.989309 |
Target: 5'- cGGGGuuCUCgcgGACGAAGA--CGUCCa -3' miRNA: 3'- -CCCUggGAGag-UUGCUUCUagGCAGG- -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 73164 | 0.67 | 0.990566 |
Target: 5'- gGGGGCgCCU-UCAGCGggGGcaucaUCgCGUUCa -3' miRNA: 3'- -CCCUG-GGAgAGUUGCuuCU-----AG-GCAGG- -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 162689 | 0.67 | 0.990566 |
Target: 5'- aGGGGCCUcggCUCGagauaGCGcGGcGUCCGUCg -3' miRNA: 3'- -CCCUGGGa--GAGU-----UGCuUC-UAGGCAGg -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 53638 | 0.67 | 0.991595 |
Target: 5'- gGGGACCCUCacucuugcaUCuggcgugguggagGACGGAGAg-CGUCUu -3' miRNA: 3'- -CCCUGGGAG---------AG-------------UUGCUUCUagGCAGG- -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 167638 | 0.67 | 0.991703 |
Target: 5'- cGGGAUgCUCgUCGGCG-GGAcggCCGUaCCg -3' miRNA: 3'- -CCCUGgGAG-AGUUGCuUCUa--GGCA-GG- -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 202548 | 0.67 | 0.991703 |
Target: 5'- uGGGAUCCgggaccgUGACGAucGGA-CCGUCCc -3' miRNA: 3'- -CCCUGGGaga----GUUGCU--UCUaGGCAGG- -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 127473 | 0.67 | 0.991703 |
Target: 5'- cGGGACCCgaccccggCgccacCGACGAGGAcaaggcgcgcgUCGUCCu -3' miRNA: 3'- -CCCUGGGa-------Ga----GUUGCUUCUa----------GGCAGG- -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 47537 | 0.67 | 0.99273 |
Target: 5'- cGGGGCCaccgacacgUCGGCGAacAGAUCC-UCCu -3' miRNA: 3'- -CCCUGGgag------AGUUGCU--UCUAGGcAGG- -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 97850 | 0.66 | 0.993652 |
Target: 5'- cGGcGGCCUccUUCGACGuguuGcgCCGUCCg -3' miRNA: 3'- -CC-CUGGGa-GAGUUGCuu--CuaGGCAGG- -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 36531 | 0.66 | 0.994478 |
Target: 5'- -cGACCUUCaugUCGcuaACGGGcAUCCGUCCg -3' miRNA: 3'- ccCUGGGAG---AGU---UGCUUcUAGGCAGG- -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 31644 | 0.66 | 0.995215 |
Target: 5'- aGGGuCCCggcCGA-GAGGAUCCG-CCg -3' miRNA: 3'- -CCCuGGGagaGUUgCUUCUAGGCaGG- -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 61586 | 0.66 | 0.995215 |
Target: 5'- uGGACgCCgUCUCGACGuaacauucggcGAGAUCCagGUCg -3' miRNA: 3'- cCCUG-GG-AGAGUUGC-----------UUCUAGG--CAGg -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 113851 | 0.66 | 0.995215 |
Target: 5'- cGGGACCgCgggCGACGAguuuGGAUuuGcCCg -3' miRNA: 3'- -CCCUGG-GagaGUUGCU----UCUAggCaGG- -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 28846 | 0.66 | 0.99587 |
Target: 5'- gGGGAUCUgUCUggaaGACGAGGGUgucCCGUCg -3' miRNA: 3'- -CCCUGGG-AGAg---UUGCUUCUA---GGCAGg -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 122029 | 0.66 | 0.99645 |
Target: 5'- gGGGGCgCUCUUcucUGucuGUCCGUCCg -3' miRNA: 3'- -CCCUGgGAGAGuu-GCuucUAGGCAGG- -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 191610 | 0.66 | 0.99645 |
Target: 5'- -aGACgCCUCUCccGCGAAG-UCCGugUCCc -3' miRNA: 3'- ccCUG-GGAGAGu-UGCUUCuAGGC--AGG- -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 134436 | 0.66 | 0.99645 |
Target: 5'- -aGGCCCgUCUUGAUGcAGAcggagCCGUCCu -3' miRNA: 3'- ccCUGGG-AGAGUUGCuUCUa----GGCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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