miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15697 5' -52.7 NC_004065.1 + 73164 0.67 0.990566
Target:  5'- gGGGGCgCCU-UCAGCGggGGcaucaUCgCGUUCa -3'
miRNA:   3'- -CCCUG-GGAgAGUUGCuuCU-----AG-GCAGG- -5'
15697 5' -52.7 NC_004065.1 + 162689 0.67 0.990566
Target:  5'- aGGGGCCUcggCUCGagauaGCGcGGcGUCCGUCg -3'
miRNA:   3'- -CCCUGGGa--GAGU-----UGCuUC-UAGGCAGg -5'
15697 5' -52.7 NC_004065.1 + 143431 0.67 0.989309
Target:  5'- gGGGGCCg-CUCGGCGGacaGGAUgaaGUCCu -3'
miRNA:   3'- -CCCUGGgaGAGUUGCU---UCUAgg-CAGG- -5'
15697 5' -52.7 NC_004065.1 + 37186 0.67 0.989309
Target:  5'- cGGGACCUggaUCUCucccuCGAGGAUgUCGUgCu -3'
miRNA:   3'- -CCCUGGG---AGAGuu---GCUUCUA-GGCAgG- -5'
15697 5' -52.7 NC_004065.1 + 106215 0.67 0.989309
Target:  5'- aGGACCUcuaugCUCGggaugugcaugAUGGAGGucagUCCGUCCa -3'
miRNA:   3'- cCCUGGGa----GAGU-----------UGCUUCU----AGGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 39815 0.67 0.989309
Target:  5'- cGGGGuuCUCgcgGACGAAGA--CGUCCa -3'
miRNA:   3'- -CCCUggGAGag-UUGCUUCUagGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 110375 0.67 0.987925
Target:  5'- uGGGA-CCUCUC-GCGcAGG-CCGUUCg -3'
miRNA:   3'- -CCCUgGGAGAGuUGCuUCUaGGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 174677 0.67 0.987925
Target:  5'- cGGGACCUcguUCUC--CGucGGGUCCGugUCCg -3'
miRNA:   3'- -CCCUGGG---AGAGuuGCu-UCUAGGC--AGG- -5'
15697 5' -52.7 NC_004065.1 + 147571 0.67 0.987925
Target:  5'- gGGuGACCCUCga---GAAGGUCaucauCGUCCu -3'
miRNA:   3'- -CC-CUGGGAGaguugCUUCUAG-----GCAGG- -5'
15697 5' -52.7 NC_004065.1 + 33578 0.67 0.987925
Target:  5'- cGGGAUCCgcCUCuuCGAGGAgaauuaCGUUCg -3'
miRNA:   3'- -CCCUGGGa-GAGuuGCUUCUag----GCAGG- -5'
15697 5' -52.7 NC_004065.1 + 35049 0.68 0.986407
Target:  5'- cGGuguCCCUCUCucGACaGAAGAUCCa-CCa -3'
miRNA:   3'- cCCu--GGGAGAG--UUG-CUUCUAGGcaGG- -5'
15697 5' -52.7 NC_004065.1 + 201583 0.68 0.986407
Target:  5'- uGGAucucacguCCCggCagGGCGGAGAUCCuGUCCg -3'
miRNA:   3'- cCCU--------GGGa-GagUUGCUUCUAGG-CAGG- -5'
15697 5' -52.7 NC_004065.1 + 49676 0.68 0.986407
Target:  5'- gGGGAcagucgucccuCCgUCUCcggAACGAGGAUUCG-CCg -3'
miRNA:   3'- -CCCU-----------GGgAGAG---UUGCUUCUAGGCaGG- -5'
15697 5' -52.7 NC_004065.1 + 186854 0.68 0.984746
Target:  5'- cGGGGUCCUCgggagUAGCGuacGGAgcgccgCCGUCCu -3'
miRNA:   3'- -CCCUGGGAGa----GUUGCu--UCUa-----GGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 53494 0.68 0.984746
Target:  5'- cGGGAagauggugaCCUCuUCAuCGGAGAggaUCGUCCg -3'
miRNA:   3'- -CCCUg--------GGAG-AGUuGCUUCUa--GGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 35894 0.68 0.982935
Target:  5'- gGGGACCCUgUCGcCGAuGAcaUCCccgCCg -3'
miRNA:   3'- -CCCUGGGAgAGUuGCUuCU--AGGca-GG- -5'
15697 5' -52.7 NC_004065.1 + 168204 0.68 0.980967
Target:  5'- -uGGCgCCUCcgaaucCGAUGAAGcgCCGUCCg -3'
miRNA:   3'- ccCUG-GGAGa-----GUUGCUUCuaGGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 113734 0.68 0.980967
Target:  5'- cGGugCCgacCGugGAGGAUUCGUCg -3'
miRNA:   3'- cCCugGGagaGUugCUUCUAGGCAGg -5'
15697 5' -52.7 NC_004065.1 + 137275 0.68 0.978833
Target:  5'- aGGGCUCggucCUCAGCG-GGAUCuCGUCg -3'
miRNA:   3'- cCCUGGGa---GAGUUGCuUCUAG-GCAGg -5'
15697 5' -52.7 NC_004065.1 + 111015 0.68 0.978833
Target:  5'- aGGGAgccucaUCCUCUCGAUguggagGAAGGUCUGgcaCCg -3'
miRNA:   3'- -CCCU------GGGAGAGUUG------CUUCUAGGCa--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.