miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15697 5' -52.7 NC_004065.1 + 7184 0.71 0.933304
Target:  5'- uGGGCCgUCUUggUGGAGGUUUagGUCCg -3'
miRNA:   3'- cCCUGGgAGAGuuGCUUCUAGG--CAGG- -5'
15697 5' -52.7 NC_004065.1 + 18152 0.79 0.549209
Target:  5'- aGGcGACaguCUCUCGACGGGcGUCCGUCCg -3'
miRNA:   3'- -CC-CUGg--GAGAGUUGCUUcUAGGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 28846 0.66 0.99587
Target:  5'- gGGGAUCUgUCUggaaGACGAGGGUgucCCGUCg -3'
miRNA:   3'- -CCCUGGG-AGAg---UUGCUUCUA---GGCAGg -5'
15697 5' -52.7 NC_004065.1 + 31644 0.66 0.995215
Target:  5'- aGGGuCCCggcCGA-GAGGAUCCG-CCg -3'
miRNA:   3'- -CCCuGGGagaGUUgCUUCUAGGCaGG- -5'
15697 5' -52.7 NC_004065.1 + 33578 0.67 0.987925
Target:  5'- cGGGAUCCgcCUCuuCGAGGAgaauuaCGUUCg -3'
miRNA:   3'- -CCCUGGGa-GAGuuGCUUCUag----GCAGG- -5'
15697 5' -52.7 NC_004065.1 + 34106 0.7 0.955032
Target:  5'- gGGGGCUC-CUCAG-GGAGAUCgaguuCGUCCc -3'
miRNA:   3'- -CCCUGGGaGAGUUgCUUCUAG-----GCAGG- -5'
15697 5' -52.7 NC_004065.1 + 34781 0.66 0.996961
Target:  5'- --aGCCCgCcCGGCGAAGAUagaagaacacCCGUCCg -3'
miRNA:   3'- cccUGGGaGaGUUGCUUCUA----------GGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 35049 0.68 0.986407
Target:  5'- cGGuguCCCUCUCucGACaGAAGAUCCa-CCa -3'
miRNA:   3'- cCCu--GGGAGAG--UUG-CUUCUAGGcaGG- -5'
15697 5' -52.7 NC_004065.1 + 35894 0.68 0.982935
Target:  5'- gGGGACCCUgUCGcCGAuGAcaUCCccgCCg -3'
miRNA:   3'- -CCCUGGGAgAGUuGCUuCU--AGGca-GG- -5'
15697 5' -52.7 NC_004065.1 + 36531 0.66 0.994478
Target:  5'- -cGACCUUCaugUCGcuaACGGGcAUCCGUCCg -3'
miRNA:   3'- ccCUGGGAG---AGU---UGCUUcUAGGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 37186 0.67 0.989309
Target:  5'- cGGGACCUggaUCUCucccuCGAGGAUgUCGUgCu -3'
miRNA:   3'- -CCCUGGG---AGAGuu---GCUUCUA-GGCAgG- -5'
15697 5' -52.7 NC_004065.1 + 39815 0.67 0.989309
Target:  5'- cGGGGuuCUCgcgGACGAAGA--CGUCCa -3'
miRNA:   3'- -CCCUggGAGag-UUGCUUCUagGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 41025 1.16 0.00442
Target:  5'- aGGGACCCUCUCAACGAAGAUCCGUCCg -3'
miRNA:   3'- -CCCUGGGAGAGUUGCUUCUAGGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 47537 0.67 0.99273
Target:  5'- cGGGGCCaccgacacgUCGGCGAacAGAUCC-UCCu -3'
miRNA:   3'- -CCCUGGgag------AGUUGCU--UCUAGGcAGG- -5'
15697 5' -52.7 NC_004065.1 + 49676 0.68 0.986407
Target:  5'- gGGGAcagucgucccuCCgUCUCcggAACGAGGAUUCG-CCg -3'
miRNA:   3'- -CCCU-----------GGgAGAG---UUGCUUCUAGGCaGG- -5'
15697 5' -52.7 NC_004065.1 + 53345 0.66 0.996815
Target:  5'- cGGugCUaCUCAucuuuuaguccgcgGCGAAGAcgCCGUUCg -3'
miRNA:   3'- cCCugGGaGAGU--------------UGCUUCUa-GGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 53494 0.68 0.984746
Target:  5'- cGGGAagauggugaCCUCuUCAuCGGAGAggaUCGUCCg -3'
miRNA:   3'- -CCCUg--------GGAG-AGUuGCUUCUa--GGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 53638 0.67 0.991595
Target:  5'- gGGGACCCUCacucuugcaUCuggcgugguggagGACGGAGAg-CGUCUu -3'
miRNA:   3'- -CCCUGGGAG---------AG-------------UUGCUUCUagGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 55857 0.71 0.938099
Target:  5'- cGGAUCCUCcguauagucgaUCGGCGucGAUCggCGUCCa -3'
miRNA:   3'- cCCUGGGAG-----------AGUUGCuuCUAG--GCAGG- -5'
15697 5' -52.7 NC_004065.1 + 61346 0.66 0.996961
Target:  5'- cGGcGACCCgggCgaaGACGGAGAugggggucuccUCgCGUCCc -3'
miRNA:   3'- -CC-CUGGGa--Gag-UUGCUUCU-----------AG-GCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.