miRNA display CGI


Results 41 - 60 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15697 5' -52.7 NC_004065.1 + 127473 0.67 0.991703
Target:  5'- cGGGACCCgaccccggCgccacCGACGAGGAcaaggcgcgcgUCGUCCu -3'
miRNA:   3'- -CCCUGGGa-------Ga----GUUGCUUCUa----------GGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 130751 0.66 0.996961
Target:  5'- aGGACgCgcggCUCGAUGAGcaucuccauGGUgCCGUCCg -3'
miRNA:   3'- cCCUGgGa---GAGUUGCUU---------CUA-GGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 134436 0.66 0.99645
Target:  5'- -aGGCCCgUCUUGAUGcAGAcggagCCGUCCu -3'
miRNA:   3'- ccCUGGG-AGAGUUGCuUCUa----GGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 137275 0.68 0.978833
Target:  5'- aGGGCUCggucCUCAGCG-GGAUCuCGUCg -3'
miRNA:   3'- cCCUGGGa---GAGUUGCuUCUAG-GCAGg -5'
15697 5' -52.7 NC_004065.1 + 143431 0.67 0.989309
Target:  5'- gGGGGCCg-CUCGGCGGacaGGAUgaaGUCCu -3'
miRNA:   3'- -CCCUGGgaGAGUUGCU---UCUAgg-CAGG- -5'
15697 5' -52.7 NC_004065.1 + 145994 0.69 0.96545
Target:  5'- cGGACgCCgUCUCGaucgagaccaguACGgcGAUCCaGUCCa -3'
miRNA:   3'- cCCUG-GG-AGAGU------------UGCuuCUAGG-CAGG- -5'
15697 5' -52.7 NC_004065.1 + 146711 0.71 0.933304
Target:  5'- gGGcGACgCCgcgCUCGACGAcgAGAgcUCCGUCg -3'
miRNA:   3'- -CC-CUG-GGa--GAGUUGCU--UCU--AGGCAGg -5'
15697 5' -52.7 NC_004065.1 + 147571 0.67 0.987925
Target:  5'- gGGuGACCCUCga---GAAGGUCaucauCGUCCu -3'
miRNA:   3'- -CC-CUGGGAGaguugCUUCUAG-----GCAGG- -5'
15697 5' -52.7 NC_004065.1 + 152745 0.77 0.648532
Target:  5'- gGGGGUCCUCUCGAUGAAGAg--GUCCu -3'
miRNA:   3'- -CCCUGGGAGAGUUGCUUCUaggCAGG- -5'
15697 5' -52.7 NC_004065.1 + 162141 0.71 0.938099
Target:  5'- cGGACCUgaaaaCGGgGAAGGUCCGUCa -3'
miRNA:   3'- cCCUGGGaga--GUUgCUUCUAGGCAGg -5'
15697 5' -52.7 NC_004065.1 + 162689 0.67 0.990566
Target:  5'- aGGGGCCUcggCUCGagauaGCGcGGcGUCCGUCg -3'
miRNA:   3'- -CCCUGGGa--GAGU-----UGCuUC-UAGGCAGg -5'
15697 5' -52.7 NC_004065.1 + 167036 0.72 0.893375
Target:  5'- cGGACCCguauagguUCUCGACGAuGAUCagGUUCa -3'
miRNA:   3'- cCCUGGG--------AGAGUUGCUuCUAGg-CAGG- -5'
15697 5' -52.7 NC_004065.1 + 167638 0.67 0.991703
Target:  5'- cGGGAUgCUCgUCGGCG-GGAcggCCGUaCCg -3'
miRNA:   3'- -CCCUGgGAG-AGUUGCuUCUa--GGCA-GG- -5'
15697 5' -52.7 NC_004065.1 + 168204 0.68 0.980967
Target:  5'- -uGGCgCCUCcgaaucCGAUGAAGcgCCGUCCg -3'
miRNA:   3'- ccCUG-GGAGa-----GUUGCUUCuaGGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 174677 0.67 0.987925
Target:  5'- cGGGACCUcguUCUC--CGucGGGUCCGugUCCg -3'
miRNA:   3'- -CCCUGGG---AGAGuuGCu-UCUAGGC--AGG- -5'
15697 5' -52.7 NC_004065.1 + 186387 0.69 0.974043
Target:  5'- cGGAcaguCCCUCUaCAGCGAccAGcaccCCGUCCu -3'
miRNA:   3'- cCCU----GGGAGA-GUUGCU--UCua--GGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 186854 0.68 0.984746
Target:  5'- cGGGGUCCUCgggagUAGCGuacGGAgcgccgCCGUCCu -3'
miRNA:   3'- -CCCUGGGAGa----GUUGCu--UCUa-----GGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 188580 0.66 0.996504
Target:  5'- aGGACgCUCUCcACGGccagcaccccgucucGGUCCGUCa -3'
miRNA:   3'- cCCUGgGAGAGuUGCUu--------------CUAGGCAGg -5'
15697 5' -52.7 NC_004065.1 + 189849 0.72 0.899753
Target:  5'- cGGGACCUgCUCGucgccGCGAGGGguuugcugCCGUCg -3'
miRNA:   3'- -CCCUGGGaGAGU-----UGCUUCUa-------GGCAGg -5'
15697 5' -52.7 NC_004065.1 + 191289 0.75 0.765181
Target:  5'- cGGGGCCCUCUCugaGGCGGAGcaggauggugCCGgCCg -3'
miRNA:   3'- -CCCUGGGAGAG---UUGCUUCua--------GGCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.