miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15697 5' -52.7 NC_004065.1 + 145994 0.69 0.96545
Target:  5'- cGGACgCCgUCUCGaucgagaccaguACGgcGAUCCaGUCCa -3'
miRNA:   3'- cCCUG-GG-AGAGU------------UGCuuCUAGG-CAGG- -5'
15697 5' -52.7 NC_004065.1 + 143431 0.67 0.989309
Target:  5'- gGGGGCCg-CUCGGCGGacaGGAUgaaGUCCu -3'
miRNA:   3'- -CCCUGGgaGAGUUGCU---UCUAgg-CAGG- -5'
15697 5' -52.7 NC_004065.1 + 137275 0.68 0.978833
Target:  5'- aGGGCUCggucCUCAGCG-GGAUCuCGUCg -3'
miRNA:   3'- cCCUGGGa---GAGUUGCuUCUAG-GCAGg -5'
15697 5' -52.7 NC_004065.1 + 134436 0.66 0.99645
Target:  5'- -aGGCCCgUCUUGAUGcAGAcggagCCGUCCu -3'
miRNA:   3'- ccCUGGG-AGAGUUGCuUCUa----GGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 130751 0.66 0.996961
Target:  5'- aGGACgCgcggCUCGAUGAGcaucuccauGGUgCCGUCCg -3'
miRNA:   3'- cCCUGgGa---GAGUUGCUU---------CUA-GGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 127473 0.67 0.991703
Target:  5'- cGGGACCCgaccccggCgccacCGACGAGGAcaaggcgcgcgUCGUCCu -3'
miRNA:   3'- -CCCUGGGa-------Ga----GUUGCUUCUa----------GGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 122029 0.66 0.99645
Target:  5'- gGGGGCgCUCUUcucUGucuGUCCGUCCg -3'
miRNA:   3'- -CCCUGgGAGAGuu-GCuucUAGGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 120579 0.71 0.916989
Target:  5'- cGGGACCUccggcgccggUCUCGgccgggugcACGAGGAUCgaguagcucguggCGUCCg -3'
miRNA:   3'- -CCCUGGG----------AGAGU---------UGCUUCUAG-------------GCAGG- -5'
15697 5' -52.7 NC_004065.1 + 114997 0.71 0.92828
Target:  5'- aGGGCgaCUCUCAACGA-GAUCCG-Ca -3'
miRNA:   3'- cCCUGg-GAGAGUUGCUuCUAGGCaGg -5'
15697 5' -52.7 NC_004065.1 + 113904 0.72 0.885433
Target:  5'- gGGGaACCCggcgcugagauaCUCGACGAcgGGGUCCGcuUCCa -3'
miRNA:   3'- -CCC-UGGGa-----------GAGUUGCU--UCUAGGC--AGG- -5'
15697 5' -52.7 NC_004065.1 + 113851 0.66 0.995215
Target:  5'- cGGGACCgCgggCGACGAguuuGGAUuuGcCCg -3'
miRNA:   3'- -CCCUGG-GagaGUUGCU----UCUAggCaGG- -5'
15697 5' -52.7 NC_004065.1 + 113734 0.68 0.980967
Target:  5'- cGGugCCgacCGugGAGGAUUCGUCg -3'
miRNA:   3'- cCCugGGagaGUugCUUCUAGGCAGg -5'
15697 5' -52.7 NC_004065.1 + 111680 0.74 0.809841
Target:  5'- cGGGGCCCugcaUCUCAcagACGggGAggaaUCCGgCCc -3'
miRNA:   3'- -CCCUGGG----AGAGU---UGCuuCU----AGGCaGG- -5'
15697 5' -52.7 NC_004065.1 + 111015 0.68 0.978833
Target:  5'- aGGGAgccucaUCCUCUCGAUguggagGAAGGUCUGgcaCCg -3'
miRNA:   3'- -CCCU------GGGAGAGUUG------CUUCUAGGCa--GG- -5'
15697 5' -52.7 NC_004065.1 + 110375 0.67 0.987925
Target:  5'- uGGGA-CCUCUC-GCGcAGG-CCGUUCg -3'
miRNA:   3'- -CCCUgGGAGAGuUGCuUCUaGGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 107910 0.7 0.951131
Target:  5'- cGGuGAUCUUCUCcAUGAAGGUaCCGUgCa -3'
miRNA:   3'- -CC-CUGGGAGAGuUGCUUCUA-GGCAgG- -5'
15697 5' -52.7 NC_004065.1 + 106215 0.67 0.989309
Target:  5'- aGGACCUcuaugCUCGggaugugcaugAUGGAGGucagUCCGUCCa -3'
miRNA:   3'- cCCUGGGa----GAGU-----------UGCUUCU----AGGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 102278 0.71 0.938099
Target:  5'- gGGGAguucaCCCUCUCgGACGAGGAcagCGUCg -3'
miRNA:   3'- -CCCU-----GGGAGAG-UUGCUUCUag-GCAGg -5'
15697 5' -52.7 NC_004065.1 + 102220 0.69 0.973785
Target:  5'- -cGGCCCUgagGACGAuauauucGGAUCCGUCCc -3'
miRNA:   3'- ccCUGGGAgagUUGCU-------UCUAGGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 97850 0.66 0.993652
Target:  5'- cGGcGGCCUccUUCGACGuguuGcgCCGUCCg -3'
miRNA:   3'- -CC-CUGGGa-GAGUUGCuu--CuaGGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.