Results 1 - 20 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15697 | 5' | -52.7 | NC_004065.1 | + | 110375 | 0.67 | 0.987925 |
Target: 5'- uGGGA-CCUCUC-GCGcAGG-CCGUUCg -3' miRNA: 3'- -CCCUgGGAGAGuUGCuUCUaGGCAGG- -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 186387 | 0.69 | 0.974043 |
Target: 5'- cGGAcaguCCCUCUaCAGCGAccAGcaccCCGUCCu -3' miRNA: 3'- cCCU----GGGAGA-GUUGCU--UCua--GGCAGG- -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 211011 | 0.69 | 0.976528 |
Target: 5'- cGGACCUUCUCuguACGA-GAUgaacgucgCCGUCa -3' miRNA: 3'- cCCUGGGAGAGu--UGCUuCUA--------GGCAGg -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 111015 | 0.68 | 0.978833 |
Target: 5'- aGGGAgccucaUCCUCUCGAUguggagGAAGGUCUGgcaCCg -3' miRNA: 3'- -CCCU------GGGAGAGUUG------CUUCUAGGCa--GG- -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 168204 | 0.68 | 0.980967 |
Target: 5'- -uGGCgCCUCcgaaucCGAUGAAGcgCCGUCCg -3' miRNA: 3'- ccCUG-GGAGa-----GUUGCUUCuaGGCAGG- -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 53494 | 0.68 | 0.984746 |
Target: 5'- cGGGAagauggugaCCUCuUCAuCGGAGAggaUCGUCCg -3' miRNA: 3'- -CCCUg--------GGAG-AGUuGCUUCUa--GGCAGG- -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 35049 | 0.68 | 0.986407 |
Target: 5'- cGGuguCCCUCUCucGACaGAAGAUCCa-CCa -3' miRNA: 3'- cCCu--GGGAGAG--UUG-CUUCUAGGcaGG- -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 147571 | 0.67 | 0.987925 |
Target: 5'- gGGuGACCCUCga---GAAGGUCaucauCGUCCu -3' miRNA: 3'- -CC-CUGGGAGaguugCUUCUAG-----GCAGG- -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 174677 | 0.67 | 0.987925 |
Target: 5'- cGGGACCUcguUCUC--CGucGGGUCCGugUCCg -3' miRNA: 3'- -CCCUGGG---AGAGuuGCu-UCUAGGC--AGG- -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 64337 | 0.69 | 0.968511 |
Target: 5'- cGGACCagugUCUaauaGACGAAGAaaccgaCCGUCCu -3' miRNA: 3'- cCCUGGg---AGAg---UUGCUUCUa-----GGCAGG- -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 145994 | 0.69 | 0.96545 |
Target: 5'- cGGACgCCgUCUCGaucgagaccaguACGgcGAUCCaGUCCa -3' miRNA: 3'- cCCUG-GG-AGAGU------------UGCuuCUAGG-CAGG- -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 221673 | 0.7 | 0.963517 |
Target: 5'- cGGGACCCagUCUCucuuugucaccgcCGGAucgcGAUCCGUUCg -3' miRNA: 3'- -CCCUGGG--AGAGuu-----------GCUU----CUAGGCAGG- -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 189849 | 0.72 | 0.899753 |
Target: 5'- cGGGACCUgCUCGucgccGCGAGGGguuugcugCCGUCg -3' miRNA: 3'- -CCCUGGGaGAGU-----UGCUUCUa-------GGCAGg -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 198737 | 0.72 | 0.911843 |
Target: 5'- --aACCCUCgcgugUCGuacggguCGGAGGUCCGUCCg -3' miRNA: 3'- cccUGGGAG-----AGUu------GCUUCUAGGCAGG- -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 120579 | 0.71 | 0.916989 |
Target: 5'- cGGGACCUccggcgccggUCUCGgccgggugcACGAGGAUCgaguagcucguggCGUCCg -3' miRNA: 3'- -CCCUGGG----------AGAGU---------UGCUUCUAG-------------GCAGG- -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 114997 | 0.71 | 0.92828 |
Target: 5'- aGGGCgaCUCUCAACGA-GAUCCG-Ca -3' miRNA: 3'- cCCUGg-GAGAGUUGCUuCUAGGCaGg -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 146711 | 0.71 | 0.933304 |
Target: 5'- gGGcGACgCCgcgCUCGACGAcgAGAgcUCCGUCg -3' miRNA: 3'- -CC-CUG-GGa--GAGUUGCU--UCU--AGGCAGg -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 55857 | 0.71 | 0.938099 |
Target: 5'- cGGAUCCUCcguauagucgaUCGGCGucGAUCggCGUCCa -3' miRNA: 3'- cCCUGGGAG-----------AGUUGCuuCUAG--GCAGG- -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 102278 | 0.71 | 0.938099 |
Target: 5'- gGGGAguucaCCCUCUCgGACGAGGAcagCGUCg -3' miRNA: 3'- -CCCU-----GGGAGAG-UUGCUUCUag-GCAGg -5' |
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15697 | 5' | -52.7 | NC_004065.1 | + | 162141 | 0.71 | 0.938099 |
Target: 5'- cGGACCUgaaaaCGGgGAAGGUCCGUCa -3' miRNA: 3'- cCCUGGGaga--GUUgCUUCUAGGCAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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