miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15697 5' -52.7 NC_004065.1 + 41025 1.16 0.00442
Target:  5'- aGGGACCCUCUCAACGAAGAUCCGUCCg -3'
miRNA:   3'- -CCCUGGGAGAGUUGCUUCUAGGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 49676 0.68 0.986407
Target:  5'- gGGGAcagucgucccuCCgUCUCcggAACGAGGAUUCG-CCg -3'
miRNA:   3'- -CCCU-----------GGgAGAG---UUGCUUCUAGGCaGG- -5'
15697 5' -52.7 NC_004065.1 + 143431 0.67 0.989309
Target:  5'- gGGGGCCg-CUCGGCGGacaGGAUgaaGUCCu -3'
miRNA:   3'- -CCCUGGgaGAGUUGCU---UCUAgg-CAGG- -5'
15697 5' -52.7 NC_004065.1 + 130751 0.66 0.996961
Target:  5'- aGGACgCgcggCUCGAUGAGcaucuccauGGUgCCGUCCg -3'
miRNA:   3'- cCCUGgGa---GAGUUGCUU---------CUA-GGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 113904 0.72 0.885433
Target:  5'- gGGGaACCCggcgcugagauaCUCGACGAcgGGGUCCGcuUCCa -3'
miRNA:   3'- -CCC-UGGGa-----------GAGUUGCU--UCUAGGC--AGG- -5'
15697 5' -52.7 NC_004065.1 + 167036 0.72 0.893375
Target:  5'- cGGACCCguauagguUCUCGACGAuGAUCagGUUCa -3'
miRNA:   3'- cCCUGGG--------AGAGUUGCUuCUAGg-CAGG- -5'
15697 5' -52.7 NC_004065.1 + 107910 0.7 0.951131
Target:  5'- cGGuGAUCUUCUCcAUGAAGGUaCCGUgCa -3'
miRNA:   3'- -CC-CUGGGAGAGuUGCUUCUA-GGCAgG- -5'
15697 5' -52.7 NC_004065.1 + 34106 0.7 0.955032
Target:  5'- gGGGGCUC-CUCAG-GGAGAUCgaguuCGUCCc -3'
miRNA:   3'- -CCCUGGGaGAGUUgCUUCUAG-----GCAGG- -5'
15697 5' -52.7 NC_004065.1 + 65910 0.69 0.976528
Target:  5'- cGGAUCUUCcugCGGCGGcagcggcagcGGGUCCGUCa -3'
miRNA:   3'- cCCUGGGAGa--GUUGCU----------UCUAGGCAGg -5'
15697 5' -52.7 NC_004065.1 + 201583 0.68 0.986407
Target:  5'- uGGAucucacguCCCggCagGGCGGAGAUCCuGUCCg -3'
miRNA:   3'- cCCU--------GGGa-GagUUGCUUCUAGG-CAGG- -5'
15697 5' -52.7 NC_004065.1 + 113734 0.68 0.980967
Target:  5'- cGGugCCgacCGugGAGGAUUCGUCg -3'
miRNA:   3'- cCCugGGagaGUugCUUCUAGGCAGg -5'
15697 5' -52.7 NC_004065.1 + 68513 0.69 0.974043
Target:  5'- aGGAUCUUCgacgcCAGCaGccGGUCCGUCCu -3'
miRNA:   3'- cCCUGGGAGa----GUUG-CuuCUAGGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 18152 0.79 0.549209
Target:  5'- aGGcGACaguCUCUCGACGGGcGUCCGUCCg -3'
miRNA:   3'- -CC-CUGg--GAGAGUUGCUUcUAGGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 35894 0.68 0.982935
Target:  5'- gGGGACCCUgUCGcCGAuGAcaUCCccgCCg -3'
miRNA:   3'- -CCCUGGGAgAGUuGCUuCU--AGGca-GG- -5'
15697 5' -52.7 NC_004065.1 + 152745 0.77 0.648532
Target:  5'- gGGGGUCCUCUCGAUGAAGAg--GUCCu -3'
miRNA:   3'- -CCCUGGGAGAGUUGCUUCUaggCAGG- -5'
15697 5' -52.7 NC_004065.1 + 102220 0.69 0.973785
Target:  5'- -cGGCCCUgagGACGAuauauucGGAUCCGUCCc -3'
miRNA:   3'- ccCUGGGAgagUUGCU-------UCUAGGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 186854 0.68 0.984746
Target:  5'- cGGGGUCCUCgggagUAGCGuacGGAgcgccgCCGUCCu -3'
miRNA:   3'- -CCCUGGGAGa----GUUGCu--UCUa-----GGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 33578 0.67 0.987925
Target:  5'- cGGGAUCCgcCUCuuCGAGGAgaauuaCGUUCg -3'
miRNA:   3'- -CCCUGGGa-GAGuuGCUUCUag----GCAGG- -5'
15697 5' -52.7 NC_004065.1 + 111680 0.74 0.809841
Target:  5'- cGGGGCCCugcaUCUCAcagACGggGAggaaUCCGgCCc -3'
miRNA:   3'- -CCCUGGG----AGAGU---UGCuuCU----AGGCaGG- -5'
15697 5' -52.7 NC_004065.1 + 7184 0.71 0.933304
Target:  5'- uGGGCCgUCUUggUGGAGGUUUagGUCCg -3'
miRNA:   3'- cCCUGGgAGAGuuGCUUCUAGG--CAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.