miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15697 5' -52.7 NC_004065.1 + 39815 0.67 0.989309
Target:  5'- cGGGGuuCUCgcgGACGAAGA--CGUCCa -3'
miRNA:   3'- -CCCUggGAGag-UUGCUUCUagGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 31644 0.66 0.995215
Target:  5'- aGGGuCCCggcCGA-GAGGAUCCG-CCg -3'
miRNA:   3'- -CCCuGGGagaGUUgCUUCUAGGCaGG- -5'
15697 5' -52.7 NC_004065.1 + 143431 0.67 0.989309
Target:  5'- gGGGGCCg-CUCGGCGGacaGGAUgaaGUCCu -3'
miRNA:   3'- -CCCUGGgaGAGUUGCU---UCUAgg-CAGG- -5'
15697 5' -52.7 NC_004065.1 + 68513 0.69 0.974043
Target:  5'- aGGAUCUUCgacgcCAGCaGccGGUCCGUCCu -3'
miRNA:   3'- cCCUGGGAGa----GUUG-CuuCUAGGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 97850 0.66 0.993652
Target:  5'- cGGcGGCCUccUUCGACGuguuGcgCCGUCCg -3'
miRNA:   3'- -CC-CUGGGa-GAGUUGCuu--CuaGGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 73164 0.67 0.990566
Target:  5'- gGGGGCgCCU-UCAGCGggGGcaucaUCgCGUUCa -3'
miRNA:   3'- -CCCUG-GGAgAGUUGCuuCU-----AG-GCAGG- -5'
15697 5' -52.7 NC_004065.1 + 113851 0.66 0.995215
Target:  5'- cGGGACCgCgggCGACGAguuuGGAUuuGcCCg -3'
miRNA:   3'- -CCCUGG-GagaGUUGCU----UCUAggCaGG- -5'
15697 5' -52.7 NC_004065.1 + 53345 0.66 0.996815
Target:  5'- cGGugCUaCUCAucuuuuaguccgcgGCGAAGAcgCCGUUCg -3'
miRNA:   3'- cCCugGGaGAGU--------------UGCUUCUa-GGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 102220 0.69 0.973785
Target:  5'- -cGGCCCUgagGACGAuauauucGGAUCCGUCCc -3'
miRNA:   3'- ccCUGGGAgagUUGCU-------UCUAGGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 34106 0.7 0.955032
Target:  5'- gGGGGCUC-CUCAG-GGAGAUCgaguuCGUCCc -3'
miRNA:   3'- -CCCUGGGaGAGUUgCUUCUAG-----GCAGG- -5'
15697 5' -52.7 NC_004065.1 + 137275 0.68 0.978833
Target:  5'- aGGGCUCggucCUCAGCG-GGAUCuCGUCg -3'
miRNA:   3'- cCCUGGGa---GAGUUGCuUCUAG-GCAGg -5'
15697 5' -52.7 NC_004065.1 + 186854 0.68 0.984746
Target:  5'- cGGGGUCCUCgggagUAGCGuacGGAgcgccgCCGUCCu -3'
miRNA:   3'- -CCCUGGGAGa----GUUGCu--UCUa-----GGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 65910 0.69 0.976528
Target:  5'- cGGAUCUUCcugCGGCGGcagcggcagcGGGUCCGUCa -3'
miRNA:   3'- cCCUGGGAGa--GUUGCU----------UCUAGGCAGg -5'
15697 5' -52.7 NC_004065.1 + 55857 0.71 0.938099
Target:  5'- cGGAUCCUCcguauagucgaUCGGCGucGAUCggCGUCCa -3'
miRNA:   3'- cCCUGGGAG-----------AGUUGCuuCUAG--GCAGG- -5'
15697 5' -52.7 NC_004065.1 + 188580 0.66 0.996504
Target:  5'- aGGACgCUCUCcACGGccagcaccccgucucGGUCCGUCa -3'
miRNA:   3'- cCCUGgGAGAGuUGCUu--------------CUAGGCAGg -5'
15697 5' -52.7 NC_004065.1 + 191610 0.66 0.99645
Target:  5'- -aGACgCCUCUCccGCGAAG-UCCGugUCCc -3'
miRNA:   3'- ccCUG-GGAGAGu-UGCUUCuAGGC--AGG- -5'
15697 5' -52.7 NC_004065.1 + 122029 0.66 0.99645
Target:  5'- gGGGGCgCUCUUcucUGucuGUCCGUCCg -3'
miRNA:   3'- -CCCUGgGAGAGuu-GCuucUAGGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 61586 0.66 0.995215
Target:  5'- uGGACgCCgUCUCGACGuaacauucggcGAGAUCCagGUCg -3'
miRNA:   3'- cCCUG-GG-AGAGUUGC-----------UUCUAGG--CAGg -5'
15697 5' -52.7 NC_004065.1 + 211011 0.69 0.976528
Target:  5'- cGGACCUUCUCuguACGA-GAUgaacgucgCCGUCa -3'
miRNA:   3'- cCCUGGGAGAGu--UGCUuCUA--------GGCAGg -5'
15697 5' -52.7 NC_004065.1 + 111015 0.68 0.978833
Target:  5'- aGGGAgccucaUCCUCUCGAUguggagGAAGGUCUGgcaCCg -3'
miRNA:   3'- -CCCU------GGGAGAGUUG------CUUCUAGGCa--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.