miRNA display CGI


Results 41 - 60 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15697 5' -52.7 NC_004065.1 + 55857 0.71 0.938099
Target:  5'- cGGAUCCUCcguauagucgaUCGGCGucGAUCggCGUCCa -3'
miRNA:   3'- cCCUGGGAG-----------AGUUGCuuCUAG--GCAGG- -5'
15697 5' -52.7 NC_004065.1 + 146711 0.71 0.933304
Target:  5'- gGGcGACgCCgcgCUCGACGAcgAGAgcUCCGUCg -3'
miRNA:   3'- -CC-CUG-GGa--GAGUUGCU--UCU--AGGCAGg -5'
15697 5' -52.7 NC_004065.1 + 114997 0.71 0.92828
Target:  5'- aGGGCgaCUCUCAACGA-GAUCCG-Ca -3'
miRNA:   3'- cCCUGg-GAGAGUUGCUuCUAGGCaGg -5'
15697 5' -52.7 NC_004065.1 + 188580 0.66 0.996504
Target:  5'- aGGACgCUCUCcACGGccagcaccccgucucGGUCCGUCa -3'
miRNA:   3'- cCCUGgGAGAGuUGCUu--------------CUAGGCAGg -5'
15697 5' -52.7 NC_004065.1 + 198737 0.72 0.911843
Target:  5'- --aACCCUCgcgugUCGuacggguCGGAGGUCCGUCCg -3'
miRNA:   3'- cccUGGGAG-----AGUu------GCUUCUAGGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 191610 0.66 0.99645
Target:  5'- -aGACgCCUCUCccGCGAAG-UCCGugUCCc -3'
miRNA:   3'- ccCUG-GGAGAGu-UGCUUCuAGGC--AGG- -5'
15697 5' -52.7 NC_004065.1 + 186387 0.69 0.974043
Target:  5'- cGGAcaguCCCUCUaCAGCGAccAGcaccCCGUCCu -3'
miRNA:   3'- cCCU----GGGAGA-GUUGCU--UCua--GGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 211011 0.69 0.976528
Target:  5'- cGGACCUUCUCuguACGA-GAUgaacgucgCCGUCa -3'
miRNA:   3'- cCCUGGGAGAGu--UGCUuCUA--------GGCAGg -5'
15697 5' -52.7 NC_004065.1 + 202548 0.67 0.991703
Target:  5'- uGGGAUCCgggaccgUGACGAucGGA-CCGUCCc -3'
miRNA:   3'- -CCCUGGGaga----GUUGCU--UCUaGGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 61346 0.66 0.996961
Target:  5'- cGGcGACCCgggCgaaGACGGAGAugggggucuccUCgCGUCCc -3'
miRNA:   3'- -CC-CUGGGa--Gag-UUGCUUCU-----------AG-GCAGG- -5'
15697 5' -52.7 NC_004065.1 + 127473 0.67 0.991703
Target:  5'- cGGGACCCgaccccggCgccacCGACGAGGAcaaggcgcgcgUCGUCCu -3'
miRNA:   3'- -CCCUGGGa-------Ga----GUUGCUUCUa----------GGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 167638 0.67 0.991703
Target:  5'- cGGGAUgCUCgUCGGCG-GGAcggCCGUaCCg -3'
miRNA:   3'- -CCCUGgGAG-AGUUGCuUCUa--GGCA-GG- -5'
15697 5' -52.7 NC_004065.1 + 106215 0.67 0.989309
Target:  5'- aGGACCUcuaugCUCGggaugugcaugAUGGAGGucagUCCGUCCa -3'
miRNA:   3'- cCCUGGGa----GAGU-----------UGCUUCU----AGGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 110375 0.67 0.987925
Target:  5'- uGGGA-CCUCUC-GCGcAGG-CCGUUCg -3'
miRNA:   3'- -CCCUgGGAGAGuUGCuUCUaGGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 174677 0.67 0.987925
Target:  5'- cGGGACCUcguUCUC--CGucGGGUCCGugUCCg -3'
miRNA:   3'- -CCCUGGG---AGAGuuGCu-UCUAGGC--AGG- -5'
15697 5' -52.7 NC_004065.1 + 147571 0.67 0.987925
Target:  5'- gGGuGACCCUCga---GAAGGUCaucauCGUCCu -3'
miRNA:   3'- -CC-CUGGGAGaguugCUUCUAG-----GCAGG- -5'
15697 5' -52.7 NC_004065.1 + 35049 0.68 0.986407
Target:  5'- cGGuguCCCUCUCucGACaGAAGAUCCa-CCa -3'
miRNA:   3'- cCCu--GGGAGAG--UUG-CUUCUAGGcaGG- -5'
15697 5' -52.7 NC_004065.1 + 53494 0.68 0.984746
Target:  5'- cGGGAagauggugaCCUCuUCAuCGGAGAggaUCGUCCg -3'
miRNA:   3'- -CCCUg--------GGAG-AGUuGCUUCUa--GGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 34781 0.66 0.996961
Target:  5'- --aGCCCgCcCGGCGAAGAUagaagaacacCCGUCCg -3'
miRNA:   3'- cccUGGGaGaGUUGCUUCUA----------GGCAGG- -5'
15697 5' -52.7 NC_004065.1 + 111015 0.68 0.978833
Target:  5'- aGGGAgccucaUCCUCUCGAUguggagGAAGGUCUGgcaCCg -3'
miRNA:   3'- -CCCU------GGGAGAGUUG------CUUCUAGGCa--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.