Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15698 | 5' | -56.5 | NC_004065.1 | + | 196332 | 0.69 | 0.833054 |
Target: 5'- gGCAGGUGGggacagaugacUCGCaUCUCGCa--GCGGc -3' miRNA: 3'- aCGUCCAUC-----------AGCG-AGAGCGagaCGCC- -5' |
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15698 | 5' | -56.5 | NC_004065.1 | + | 100510 | 0.69 | 0.828184 |
Target: 5'- aGCAGGUAGUUGCgccggcacacgcgcgUCUCGUcuucuuuuucUCUGCc- -3' miRNA: 3'- aCGUCCAUCAGCG---------------AGAGCG----------AGACGcc -5' |
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15698 | 5' | -56.5 | NC_004065.1 | + | 37913 | 0.69 | 0.816587 |
Target: 5'- uUGCAGGUA-UCGCgcauaGaCUCUGCGGc -3' miRNA: 3'- -ACGUCCAUcAGCGagag-C-GAGACGCC- -5' |
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15698 | 5' | -56.5 | NC_004065.1 | + | 195479 | 0.71 | 0.735584 |
Target: 5'- aGUcuG-AGUCGCUCUCGCUgUcGCGGg -3' miRNA: 3'- aCGucCaUCAGCGAGAGCGAgA-CGCC- -5' |
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15698 | 5' | -56.5 | NC_004065.1 | + | 139068 | 0.71 | 0.716438 |
Target: 5'- -aCAGGUAGg-GUUCUgacacaCGCUCUGCGGu -3' miRNA: 3'- acGUCCAUCagCGAGA------GCGAGACGCC- -5' |
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15698 | 5' | -56.5 | NC_004065.1 | + | 35952 | 0.73 | 0.617943 |
Target: 5'- cGCAGGUcGUCGgaCUCGCgccgCUGCu- -3' miRNA: 3'- aCGUCCAuCAGCgaGAGCGa---GACGcc -5' |
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15698 | 5' | -56.5 | NC_004065.1 | + | 41888 | 1 | 0.016644 |
Target: 5'- gUGCAGGUAGUCGCUCUCGUcCUGCGGg -3' miRNA: 3'- -ACGUCCAUCAGCGAGAGCGaGACGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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