miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1570 3' -52 NC_001347.2 + 53277 0.66 0.995781
Target:  5'- cGGGAAGGCcagaccuugguggAGAGAAGCuccaccuGGGUGa-- -3'
miRNA:   3'- uCCCUUCCGa------------UCUCUUUG-------UCCACagc -5'
1570 3' -52 NC_001347.2 + 136120 0.66 0.995167
Target:  5'- cGGGGAGGGUgggggguagggcGGGAGGCAGGcgGgagCGg -3'
miRNA:   3'- -UCCCUUCCGau----------CUCUUUGUCCa-Ca--GC- -5'
1570 3' -52 NC_001347.2 + 144246 0.66 0.992978
Target:  5'- cGGGGAaaAGGCguuggacggGGAGGAGCgcauguucguGGG-GUCGg -3'
miRNA:   3'- -UCCCU--UCCGa--------UCUCUUUG----------UCCaCAGC- -5'
1570 3' -52 NC_001347.2 + 135852 0.67 0.989539
Target:  5'- gAGGGAucccGGGCcggagcccggGGAGGAGCGGG-GUgGg -3'
miRNA:   3'- -UCCCU----UCCGa---------UCUCUUUGUCCaCAgC- -5'
1570 3' -52 NC_001347.2 + 58121 0.68 0.984728
Target:  5'- aGGaGGAGGGUgcucaGGAGGAGCGGGaggacacugugucUGUCa -3'
miRNA:   3'- -UC-CCUUCCGa----UCUCUUUGUCC-------------ACAGc -5'
1570 3' -52 NC_001347.2 + 203834 0.68 0.981042
Target:  5'- uGGGGAGGUcgUGGAGGcAGCGGGgGUgGu -3'
miRNA:   3'- uCCCUUCCG--AUCUCU-UUGUCCaCAgC- -5'
1570 3' -52 NC_001347.2 + 52747 0.69 0.965038
Target:  5'- cGGGAAGGUaAGGGcGAACGGGUaaCGg -3'
miRNA:   3'- uCCCUUCCGaUCUC-UUUGUCCAcaGC- -5'
1570 3' -52 NC_001347.2 + 177009 0.69 0.965038
Target:  5'- cAGGGAggagGGGUUaAGAGGucACAGGUG-CGa -3'
miRNA:   3'- -UCCCU----UCCGA-UCUCUu-UGUCCACaGC- -5'
1570 3' -52 NC_001347.2 + 136728 0.69 0.965038
Target:  5'- gGGGGggGGUgAGGGggGgGGGUuaCGg -3'
miRNA:   3'- -UCCCuuCCGaUCUCuuUgUCCAcaGC- -5'
1570 3' -52 NC_001347.2 + 155314 0.7 0.958049
Target:  5'- cGGGGccGGGCUGGucgggggaAGAAACGuGGUGUgGg -3'
miRNA:   3'- uCCCU--UCCGAUC--------UCUUUGU-CCACAgC- -5'
1570 3' -52 NC_001347.2 + 184120 0.7 0.958049
Target:  5'- cGGGGGuaaGGGCUGGGGuGACugaAGGUGagGg -3'
miRNA:   3'- -UCCCU---UCCGAUCUCuUUG---UCCACagC- -5'
1570 3' -52 NC_001347.2 + 202422 0.73 0.836939
Target:  5'- cGGGAAGGCUAGuuAGACAGGc---- -3'
miRNA:   3'- uCCCUUCCGAUCucUUUGUCCacagc -5'
1570 3' -52 NC_001347.2 + 95156 0.75 0.755955
Target:  5'- gAGGGAacaggagaaGGGC-AGGGAcGACAGGUGUUGc -3'
miRNA:   3'- -UCCCU---------UCCGaUCUCU-UUGUCCACAGC- -5'
1570 3' -52 NC_001347.2 + 189501 1.1 0.008452
Target:  5'- cAGGGAAGGCUAGAGAAACAGGUGUCGg -3'
miRNA:   3'- -UCCCUUCCGAUCUCUUUGUCCACAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.