miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1570 5' -56.4 NC_001347.2 + 198100 0.66 0.957884
Target:  5'- -gUGACGGUcccGCUCGUCGCGUUGa--- -3'
miRNA:   3'- caGCUGCCA---UGGGCGGUGCGACaacg -5'
1570 5' -56.4 NC_001347.2 + 169123 0.66 0.957884
Target:  5'- cUCGGCcGcGCgCGCCGCGCUGcagugGCu -3'
miRNA:   3'- cAGCUGcCaUGgGCGGUGCGACaa---CG- -5'
1570 5' -56.4 NC_001347.2 + 23480 0.66 0.957884
Target:  5'- uUUGAUGGUGCCCaccaucuguuugGCCcUGCUGcacgGCa -3'
miRNA:   3'- cAGCUGCCAUGGG------------CGGuGCGACaa--CG- -5'
1570 5' -56.4 NC_001347.2 + 14786 0.66 0.955697
Target:  5'- -aUGACGGUACCCGUUcCGCgacgauauccuaagGgcGCg -3'
miRNA:   3'- caGCUGCCAUGGGCGGuGCGa-------------CaaCG- -5'
1570 5' -56.4 NC_001347.2 + 163308 0.66 0.954197
Target:  5'- gGUCG-CGGcgACUCGUCGCGCgccaGUcGCa -3'
miRNA:   3'- -CAGCuGCCa-UGGGCGGUGCGa---CAaCG- -5'
1570 5' -56.4 NC_001347.2 + 1636 0.66 0.954197
Target:  5'- -gCGugGGcACCCcgcgcGCgACGCUGcUGCc -3'
miRNA:   3'- caGCugCCaUGGG-----CGgUGCGACaACG- -5'
1570 5' -56.4 NC_001347.2 + 171604 0.66 0.953816
Target:  5'- -cUGACGGUgaacgugGCUCGCUGCGUguUUGCg -3'
miRNA:   3'- caGCUGCCA-------UGGGCGGUGCGacAACG- -5'
1570 5' -56.4 NC_001347.2 + 200145 0.66 0.950297
Target:  5'- cUCGggcGCGGaaaguguCCuCGCCACGCUGgccGCg -3'
miRNA:   3'- cAGC---UGCCau-----GG-GCGGUGCGACaa-CG- -5'
1570 5' -56.4 NC_001347.2 + 110447 0.66 0.950297
Target:  5'- gGUCu-CGGUACUgGCCuuuGCGCUGccGCu -3'
miRNA:   3'- -CAGcuGCCAUGGgCGG---UGCGACaaCG- -5'
1570 5' -56.4 NC_001347.2 + 2388 0.66 0.947854
Target:  5'- aGUCGGC---GCCCGCCGCcgaggccgcgcggcgGCUGcUGCc -3'
miRNA:   3'- -CAGCUGccaUGGGCGGUG---------------CGACaACG- -5'
1570 5' -56.4 NC_001347.2 + 65115 0.66 0.946181
Target:  5'- aUUG-CGGgcCCUGCUgACGCUGUUGa -3'
miRNA:   3'- cAGCuGCCauGGGCGG-UGCGACAACg -5'
1570 5' -56.4 NC_001347.2 + 85391 0.66 0.946181
Target:  5'- aUCGugGcGUcCCCGU--CGCUGUUGUc -3'
miRNA:   3'- cAGCugC-CAuGGGCGguGCGACAACG- -5'
1570 5' -56.4 NC_001347.2 + 125013 0.66 0.941848
Target:  5'- -cUGcACGGgcucgACCgGCgGCuGCUGUUGCa -3'
miRNA:   3'- caGC-UGCCa----UGGgCGgUG-CGACAACG- -5'
1570 5' -56.4 NC_001347.2 + 190893 0.66 0.941848
Target:  5'- gGUgGccACGGUGCCCaGCaguugGCGCUGUUccGCg -3'
miRNA:   3'- -CAgC--UGCCAUGGG-CGg----UGCGACAA--CG- -5'
1570 5' -56.4 NC_001347.2 + 199573 0.67 0.937295
Target:  5'- -cUGGUGGUGCgacugcugcuaCCGCCGCGCUGcUGUu -3'
miRNA:   3'- caGCUGCCAUG-----------GGCGGUGCGACaACG- -5'
1570 5' -56.4 NC_001347.2 + 181527 0.67 0.937295
Target:  5'- -aCGACGGacucGCCCcugGCCACGCaccUGUgGCc -3'
miRNA:   3'- caGCUGCCa---UGGG---CGGUGCG---ACAaCG- -5'
1570 5' -56.4 NC_001347.2 + 157284 0.67 0.927522
Target:  5'- cGUCGGCGGUccuccagcagcaGCUggugcaucacgUGCCACGUUcUUGCg -3'
miRNA:   3'- -CAGCUGCCA------------UGG-----------GCGGUGCGAcAACG- -5'
1570 5' -56.4 NC_001347.2 + 38457 0.67 0.922302
Target:  5'- cGUCGcCGGc-CCCGCCGCGCa----- -3'
miRNA:   3'- -CAGCuGCCauGGGCGGUGCGacaacg -5'
1570 5' -56.4 NC_001347.2 + 188960 0.67 0.916302
Target:  5'- gGUCaACGGUaACUCGCCcugggcuccgacgGCGCcGUUGCc -3'
miRNA:   3'- -CAGcUGCCA-UGGGCGG-------------UGCGaCAACG- -5'
1570 5' -56.4 NC_001347.2 + 81493 0.67 0.911194
Target:  5'- cUCGGCGGgugcGCaCCGCCgguGCUGcUGCu -3'
miRNA:   3'- cAGCUGCCa---UG-GGCGGug-CGACaACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.