Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1570 | 5' | -56.4 | NC_001347.2 | + | 189535 | 1.12 | 0.002706 |
Target: 5'- cGUCGACGGUACCCGCCACGCUGUUGCa -3' miRNA: 3'- -CAGCUGCCAUGGGCGGUGCGACAACG- -5' |
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1570 | 5' | -56.4 | NC_001347.2 | + | 104800 | 0.75 | 0.562604 |
Target: 5'- aUCGACGaGUACCUGCUACGCgccaaGgacUGCa -3' miRNA: 3'- cAGCUGC-CAUGGGCGGUGCGa----Ca--ACG- -5' |
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1570 | 5' | -56.4 | NC_001347.2 | + | 150388 | 0.73 | 0.64125 |
Target: 5'- -aCGACGGUGCCCGaaACGaauagcGUUGCu -3' miRNA: 3'- caGCUGCCAUGGGCggUGCga----CAACG- -5' |
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1570 | 5' | -56.4 | NC_001347.2 | + | 67040 | 0.73 | 0.660982 |
Target: 5'- -gCGGCGGUcCUCGCgACGCUGcUGUg -3' miRNA: 3'- caGCUGCCAuGGGCGgUGCGACaACG- -5' |
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1570 | 5' | -56.4 | NC_001347.2 | + | 139472 | 0.71 | 0.754299 |
Target: 5'- --aGGCGGUgcgcgugccguuguACCCGCCuACGCUcuuuaauucGUUGCa -3' miRNA: 3'- cagCUGCCA--------------UGGGCGG-UGCGA---------CAACG- -5' |
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1570 | 5' | -56.4 | NC_001347.2 | + | 107081 | 0.71 | 0.766253 |
Target: 5'- -cUGACGGUGCgCGUacgacaCGCGCUGUgcugGCa -3' miRNA: 3'- caGCUGCCAUGgGCG------GUGCGACAa---CG- -5' |
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1570 | 5' | -56.4 | NC_001347.2 | + | 55253 | 0.71 | 0.775321 |
Target: 5'- -aUGACGGUaaaugGCCCGCCugGCauuaUGCc -3' miRNA: 3'- caGCUGCCA-----UGGGCGGugCGaca-ACG- -5' |
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1570 | 5' | -56.4 | NC_001347.2 | + | 113343 | 0.7 | 0.784271 |
Target: 5'- aGUCGcucACGGauguagaGCgCGuCCACGCUGUUGCc -3' miRNA: 3'- -CAGC---UGCCa------UGgGC-GGUGCGACAACG- -5' |
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1570 | 5' | -56.4 | NC_001347.2 | + | 115507 | 0.7 | 0.784271 |
Target: 5'- -cCGAaacCGGUGCCgGCCGCGCUagcggGCu -3' miRNA: 3'- caGCU---GCCAUGGgCGGUGCGAcaa--CG- -5' |
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1570 | 5' | -56.4 | NC_001347.2 | + | 164710 | 0.7 | 0.793092 |
Target: 5'- -cCGcuuuCGGUACCCGCCGCGUgcaacGUccagGCg -3' miRNA: 3'- caGCu---GCCAUGGGCGGUGCGa----CAa---CG- -5' |
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1570 | 5' | -56.4 | NC_001347.2 | + | 169444 | 0.7 | 0.809474 |
Target: 5'- gGUCGACGuugcacgcggaaaGUucGCCCGCgaGCGCUGUaGCu -3' miRNA: 3'- -CAGCUGC-------------CA--UGGGCGg-UGCGACAaCG- -5' |
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1570 | 5' | -56.4 | NC_001347.2 | + | 157598 | 0.7 | 0.817882 |
Target: 5'- cGUCuGCGGcucUACCCGCCcgagcggcugcacGCGUUGUUGg -3' miRNA: 3'- -CAGcUGCC---AUGGGCGG-------------UGCGACAACg -5' |
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1570 | 5' | -56.4 | NC_001347.2 | + | 2229 | 0.7 | 0.826949 |
Target: 5'- cGUCGGgGaccGUGCCgcgCGCCAUGCUGguggUGCu -3' miRNA: 3'- -CAGCUgC---CAUGG---GCGGUGCGACa---ACG- -5' |
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1570 | 5' | -56.4 | NC_001347.2 | + | 200665 | 0.69 | 0.835019 |
Target: 5'- cGUCGuuGGUuaagcgcuACUuuCGCC-CGCUGUUGCg -3' miRNA: 3'- -CAGCugCCA--------UGG--GCGGuGCGACAACG- -5' |
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1570 | 5' | -56.4 | NC_001347.2 | + | 23712 | 0.69 | 0.842917 |
Target: 5'- cGUCGAUGGcaggucaUCGUCACGCUGuUUGUg -3' miRNA: 3'- -CAGCUGCCaug----GGCGGUGCGAC-AACG- -5' |
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1570 | 5' | -56.4 | NC_001347.2 | + | 141754 | 0.69 | 0.849872 |
Target: 5'- aGUCcGCGGUucucgucGCCCGCCGaauuUGC-GUUGCa -3' miRNA: 3'- -CAGcUGCCA-------UGGGCGGU----GCGaCAACG- -5' |
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1570 | 5' | -56.4 | NC_001347.2 | + | 38201 | 0.69 | 0.85817 |
Target: 5'- -cCGcCGG-ACCCGCCAuCGCUGUc-- -3' miRNA: 3'- caGCuGCCaUGGGCGGU-GCGACAacg -5' |
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1570 | 5' | -56.4 | NC_001347.2 | + | 124980 | 0.69 | 0.85817 |
Target: 5'- -cCGACGGUgagACCCGCguCcCUGggGCu -3' miRNA: 3'- caGCUGCCA---UGGGCGguGcGACaaCG- -5' |
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1570 | 5' | -56.4 | NC_001347.2 | + | 8603 | 0.68 | 0.87961 |
Target: 5'- -----gGGUGCCCGUCACGCaGgcGCu -3' miRNA: 3'- cagcugCCAUGGGCGGUGCGaCaaCG- -5' |
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1570 | 5' | -56.4 | NC_001347.2 | + | 55062 | 0.68 | 0.886352 |
Target: 5'- ---uACGGUaaaugGCCCGCCugGCUGaccGCc -3' miRNA: 3'- cagcUGCCA-----UGGGCGGugCGACaa-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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