miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1570 5' -56.4 NC_001347.2 + 55062 0.68 0.886352
Target:  5'- ---uACGGUaaaugGCCCGCCugGCUGaccGCc -3'
miRNA:   3'- cagcUGCCA-----UGGGCGGugCGACaa-CG- -5'
1570 5' -56.4 NC_001347.2 + 8603 0.68 0.87961
Target:  5'- -----gGGUGCCCGUCACGCaGgcGCu -3'
miRNA:   3'- cagcugCCAUGGGCGGUGCGaCaaCG- -5'
1570 5' -56.4 NC_001347.2 + 124980 0.69 0.85817
Target:  5'- -cCGACGGUgagACCCGCguCcCUGggGCu -3'
miRNA:   3'- caGCUGCCA---UGGGCGguGcGACaaCG- -5'
1570 5' -56.4 NC_001347.2 + 38201 0.69 0.85817
Target:  5'- -cCGcCGG-ACCCGCCAuCGCUGUc-- -3'
miRNA:   3'- caGCuGCCaUGGGCGGU-GCGACAacg -5'
1570 5' -56.4 NC_001347.2 + 141754 0.69 0.849872
Target:  5'- aGUCcGCGGUucucgucGCCCGCCGaauuUGC-GUUGCa -3'
miRNA:   3'- -CAGcUGCCA-------UGGGCGGU----GCGaCAACG- -5'
1570 5' -56.4 NC_001347.2 + 23712 0.69 0.842917
Target:  5'- cGUCGAUGGcaggucaUCGUCACGCUGuUUGUg -3'
miRNA:   3'- -CAGCUGCCaug----GGCGGUGCGAC-AACG- -5'
1570 5' -56.4 NC_001347.2 + 200665 0.69 0.835019
Target:  5'- cGUCGuuGGUuaagcgcuACUuuCGCC-CGCUGUUGCg -3'
miRNA:   3'- -CAGCugCCA--------UGG--GCGGuGCGACAACG- -5'
1570 5' -56.4 NC_001347.2 + 2229 0.7 0.826949
Target:  5'- cGUCGGgGaccGUGCCgcgCGCCAUGCUGguggUGCu -3'
miRNA:   3'- -CAGCUgC---CAUGG---GCGGUGCGACa---ACG- -5'
1570 5' -56.4 NC_001347.2 + 157598 0.7 0.817882
Target:  5'- cGUCuGCGGcucUACCCGCCcgagcggcugcacGCGUUGUUGg -3'
miRNA:   3'- -CAGcUGCC---AUGGGCGG-------------UGCGACAACg -5'
1570 5' -56.4 NC_001347.2 + 169444 0.7 0.809474
Target:  5'- gGUCGACGuugcacgcggaaaGUucGCCCGCgaGCGCUGUaGCu -3'
miRNA:   3'- -CAGCUGC-------------CA--UGGGCGg-UGCGACAaCG- -5'
1570 5' -56.4 NC_001347.2 + 164710 0.7 0.793092
Target:  5'- -cCGcuuuCGGUACCCGCCGCGUgcaacGUccagGCg -3'
miRNA:   3'- caGCu---GCCAUGGGCGGUGCGa----CAa---CG- -5'
1570 5' -56.4 NC_001347.2 + 115507 0.7 0.784271
Target:  5'- -cCGAaacCGGUGCCgGCCGCGCUagcggGCu -3'
miRNA:   3'- caGCU---GCCAUGGgCGGUGCGAcaa--CG- -5'
1570 5' -56.4 NC_001347.2 + 113343 0.7 0.784271
Target:  5'- aGUCGcucACGGauguagaGCgCGuCCACGCUGUUGCc -3'
miRNA:   3'- -CAGC---UGCCa------UGgGC-GGUGCGACAACG- -5'
1570 5' -56.4 NC_001347.2 + 55253 0.71 0.775321
Target:  5'- -aUGACGGUaaaugGCCCGCCugGCauuaUGCc -3'
miRNA:   3'- caGCUGCCA-----UGGGCGGugCGaca-ACG- -5'
1570 5' -56.4 NC_001347.2 + 107081 0.71 0.766253
Target:  5'- -cUGACGGUGCgCGUacgacaCGCGCUGUgcugGCa -3'
miRNA:   3'- caGCUGCCAUGgGCG------GUGCGACAa---CG- -5'
1570 5' -56.4 NC_001347.2 + 139472 0.71 0.754299
Target:  5'- --aGGCGGUgcgcgugccguuguACCCGCCuACGCUcuuuaauucGUUGCa -3'
miRNA:   3'- cagCUGCCA--------------UGGGCGG-UGCGA---------CAACG- -5'
1570 5' -56.4 NC_001347.2 + 67040 0.73 0.660982
Target:  5'- -gCGGCGGUcCUCGCgACGCUGcUGUg -3'
miRNA:   3'- caGCUGCCAuGGGCGgUGCGACaACG- -5'
1570 5' -56.4 NC_001347.2 + 150388 0.73 0.64125
Target:  5'- -aCGACGGUGCCCGaaACGaauagcGUUGCu -3'
miRNA:   3'- caGCUGCCAUGGGCggUGCga----CAACG- -5'
1570 5' -56.4 NC_001347.2 + 104800 0.75 0.562604
Target:  5'- aUCGACGaGUACCUGCUACGCgccaaGgacUGCa -3'
miRNA:   3'- cAGCUGC-CAUGGGCGGUGCGa----Ca--ACG- -5'
1570 5' -56.4 NC_001347.2 + 189535 1.12 0.002706
Target:  5'- cGUCGACGGUACCCGCCACGCUGUUGCa -3'
miRNA:   3'- -CAGCUGCCAUGGGCGGUGCGACAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.