miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15700 5' -57.4 NC_004065.1 + 126064 0.66 0.922181
Target:  5'- -cUGCGUc--UCGGUGaAGGUCAGCCGc -3'
miRNA:   3'- cuGCGCGuguAGUCGC-UCCAGUCGGU- -5'
15700 5' -57.4 NC_004065.1 + 222438 0.66 0.922181
Target:  5'- -uCGCGCAacCAUCAGCcauGGagGGCCGc -3'
miRNA:   3'- cuGCGCGU--GUAGUCGcu-CCagUCGGU- -5'
15700 5' -57.4 NC_004065.1 + 22322 0.66 0.922181
Target:  5'- --aGCG-ACAUCAGCGGGGUgAaaagacGCCGu -3'
miRNA:   3'- cugCGCgUGUAGUCGCUCCAgU------CGGU- -5'
15700 5' -57.4 NC_004065.1 + 68666 0.66 0.922181
Target:  5'- uACGCGCA-GUCGGCGuacGaGUCGuGCCAg -3'
miRNA:   3'- cUGCGCGUgUAGUCGCu--C-CAGU-CGGU- -5'
15700 5' -57.4 NC_004065.1 + 99691 0.66 0.916685
Target:  5'- aGGCGCGCgAUGUCgaGGCGGcGUCuGCCGc -3'
miRNA:   3'- -CUGCGCG-UGUAG--UCGCUcCAGuCGGU- -5'
15700 5' -57.4 NC_004065.1 + 144730 0.66 0.916685
Target:  5'- aGACgGCGCACGUCguguucGGCGccauGGUC-GCCu -3'
miRNA:   3'- -CUG-CGCGUGUAG------UCGCu---CCAGuCGGu -5'
15700 5' -57.4 NC_004065.1 + 103717 0.66 0.916685
Target:  5'- cGCGCGCagaucgugaACAUCAGCucGGGUCcGCUg -3'
miRNA:   3'- cUGCGCG---------UGUAGUCGc-UCCAGuCGGu -5'
15700 5' -57.4 NC_004065.1 + 196630 0.66 0.916685
Target:  5'- gGGCGCGCuucgacCGUCcggcgcGCGGGGagGGCCGc -3'
miRNA:   3'- -CUGCGCGu-----GUAGu-----CGCUCCagUCGGU- -5'
15700 5' -57.4 NC_004065.1 + 127832 0.66 0.916685
Target:  5'- --gGCGCAC-UUGGCGAGGU-AGUCGu -3'
miRNA:   3'- cugCGCGUGuAGUCGCUCCAgUCGGU- -5'
15700 5' -57.4 NC_004065.1 + 124900 0.66 0.916685
Target:  5'- cGAUGUGCgccGCGUcCAGCGGcacgucGUCGGCCAc -3'
miRNA:   3'- -CUGCGCG---UGUA-GUCGCUc-----CAGUCGGU- -5'
15700 5' -57.4 NC_004065.1 + 461 0.66 0.916685
Target:  5'- aGACGCGCGC-UC-GCcuGaGUCAGCCu -3'
miRNA:   3'- -CUGCGCGUGuAGuCGcuC-CAGUCGGu -5'
15700 5' -57.4 NC_004065.1 + 74669 0.66 0.910964
Target:  5'- cGGCGCGUccGCcgUAGCGcaGGGUCcgauuGCCGa -3'
miRNA:   3'- -CUGCGCG--UGuaGUCGC--UCCAGu----CGGU- -5'
15700 5' -57.4 NC_004065.1 + 116006 0.66 0.910964
Target:  5'- cGACGUGCGCc---GCGGGGgCAGCUc -3'
miRNA:   3'- -CUGCGCGUGuaguCGCUCCaGUCGGu -5'
15700 5' -57.4 NC_004065.1 + 113237 0.66 0.905019
Target:  5'- aGACGCuGCACcgcgccuUCAGCGAacGuUCGGCCGc -3'
miRNA:   3'- -CUGCG-CGUGu------AGUCGCU--CcAGUCGGU- -5'
15700 5' -57.4 NC_004065.1 + 493 0.66 0.905019
Target:  5'- cGCGCGcCGCGUCcgcgggaaGGCGGGGUgAGgCGc -3'
miRNA:   3'- cUGCGC-GUGUAG--------UCGCUCCAgUCgGU- -5'
15700 5' -57.4 NC_004065.1 + 192406 0.66 0.905019
Target:  5'- -uCGCuCGCGUCAGCGcGGaaGGCCGu -3'
miRNA:   3'- cuGCGcGUGUAGUCGCuCCagUCGGU- -5'
15700 5' -57.4 NC_004065.1 + 47708 0.66 0.890507
Target:  5'- uGACGCuGCGCAUCcccucgAGCGuggccuugaucacgGGGUCagaGGCCAu -3'
miRNA:   3'- -CUGCG-CGUGUAG------UCGC--------------UCCAG---UCGGU- -5'
15700 5' -57.4 NC_004065.1 + 10640 0.67 0.885862
Target:  5'- -cCGCGCACA-CGcGCGAGGUacgAGUCGa -3'
miRNA:   3'- cuGCGCGUGUaGU-CGCUCCAg--UCGGU- -5'
15700 5' -57.4 NC_004065.1 + 131442 0.67 0.879046
Target:  5'- -uCGCGCcgccgAUGUCAG-GGGGUCGGUCAu -3'
miRNA:   3'- cuGCGCG-----UGUAGUCgCUCCAGUCGGU- -5'
15700 5' -57.4 NC_004065.1 + 28612 0.67 0.879046
Target:  5'- cGGCGCGCGaa--AGCGAGGcugCGGCg- -3'
miRNA:   3'- -CUGCGCGUguagUCGCUCCa--GUCGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.