miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15700 5' -57.4 NC_004065.1 + 42332 1.08 0.003435
Target:  5'- cGACGCGCACAUCAGCGAGGUCAGCCAc -3'
miRNA:   3'- -CUGCGCGUGUAGUCGCUCCAGUCGGU- -5'
15700 5' -57.4 NC_004065.1 + 116623 0.85 0.112738
Target:  5'- gGAUGUGCAcCGUCAGCGAGGUCGGCg- -3'
miRNA:   3'- -CUGCGCGU-GUAGUCGCUCCAGUCGgu -5'
15700 5' -57.4 NC_004065.1 + 142749 0.76 0.378832
Target:  5'- cGACGCGCagcGCGUgcCAGaCGGGGUUAGCCGc -3'
miRNA:   3'- -CUGCGCG---UGUA--GUC-GCUCCAGUCGGU- -5'
15700 5' -57.4 NC_004065.1 + 106950 0.72 0.575604
Target:  5'- gGAUGCGa--GUCgaacggagcaaaaaAGCGAGGUCGGCCAu -3'
miRNA:   3'- -CUGCGCgugUAG--------------UCGCUCCAGUCGGU- -5'
15700 5' -57.4 NC_004065.1 + 25767 0.72 0.588442
Target:  5'- uGCGCGCGCA-CGGCGAgaccgucguGGUC-GCCAg -3'
miRNA:   3'- cUGCGCGUGUaGUCGCU---------CCAGuCGGU- -5'
15700 5' -57.4 NC_004065.1 + 132 0.72 0.598354
Target:  5'- uGCGCGCACGUCAcCGAGGgcguggCAccguGCCAa -3'
miRNA:   3'- cUGCGCGUGUAGUcGCUCCa-----GU----CGGU- -5'
15700 5' -57.4 NC_004065.1 + 208043 0.72 0.598354
Target:  5'- cGACGCaGCACGcUCAGauCGAGGUCGGUg- -3'
miRNA:   3'- -CUGCG-CGUGU-AGUC--GCUCCAGUCGgu -5'
15700 5' -57.4 NC_004065.1 + 134442 0.72 0.604312
Target:  5'- aACGCGCugcagaaggugccCAUCAGCGucauAGGUCAGCUg -3'
miRNA:   3'- cUGCGCGu------------GUAGUCGC----UCCAGUCGGu -5'
15700 5' -57.4 NC_004065.1 + 61712 0.72 0.608288
Target:  5'- uGGCGCaGCGCAUCacggAGCG-GGUCgGGCCGg -3'
miRNA:   3'- -CUGCG-CGUGUAG----UCGCuCCAG-UCGGU- -5'
15700 5' -57.4 NC_004065.1 + 135907 0.72 0.608288
Target:  5'- cGACGCGCguuacgGCcgCGGCGAGcuGUCGGCUg -3'
miRNA:   3'- -CUGCGCG------UGuaGUCGCUC--CAGUCGGu -5'
15700 5' -57.4 NC_004065.1 + 150415 0.72 0.61824
Target:  5'- -cCGCGCGCG-CAGCG-GGUcCGGCCu -3'
miRNA:   3'- cuGCGCGUGUaGUCGCuCCA-GUCGGu -5'
15700 5' -57.4 NC_004065.1 + 16855 0.71 0.658075
Target:  5'- -cUGCGCACGcaCGGCGAGGgcgAGCCAg -3'
miRNA:   3'- cuGCGCGUGUa-GUCGCUCCag-UCGGU- -5'
15700 5' -57.4 NC_004065.1 + 60902 0.71 0.668003
Target:  5'- cGACGCGUGCGUgGcGCGGGGcaacaCGGCCGu -3'
miRNA:   3'- -CUGCGCGUGUAgU-CGCUCCa----GUCGGU- -5'
15700 5' -57.4 NC_004065.1 + 195313 0.71 0.677904
Target:  5'- -uCGCGCAuCGUCAGCGAGuagaGUCGcugcGCCAg -3'
miRNA:   3'- cuGCGCGU-GUAGUCGCUC----CAGU----CGGU- -5'
15700 5' -57.4 NC_004065.1 + 47951 0.71 0.687769
Target:  5'- gGAUGCGCAgCGUCA-UGAGGUCGGUgGa -3'
miRNA:   3'- -CUGCGCGU-GUAGUcGCUCCAGUCGgU- -5'
15700 5' -57.4 NC_004065.1 + 197397 0.7 0.697591
Target:  5'- aGAgGCGCGC--CGGCGAGcGUCuGCCGc -3'
miRNA:   3'- -CUgCGCGUGuaGUCGCUC-CAGuCGGU- -5'
15700 5' -57.4 NC_004065.1 + 196192 0.7 0.70736
Target:  5'- uGGCGCGCAC---GGCGuGGUUgauGGCCAg -3'
miRNA:   3'- -CUGCGCGUGuagUCGCuCCAG---UCGGU- -5'
15700 5' -57.4 NC_004065.1 + 199582 0.7 0.717069
Target:  5'- aGACGC-CGCuUCGGC-AGGUCAGCUu -3'
miRNA:   3'- -CUGCGcGUGuAGUCGcUCCAGUCGGu -5'
15700 5' -57.4 NC_004065.1 + 212772 0.69 0.755132
Target:  5'- gGGCGUGCGgcUCAGCgGAGGUCgugcGGCCc -3'
miRNA:   3'- -CUGCGCGUguAGUCG-CUCCAG----UCGGu -5'
15700 5' -57.4 NC_004065.1 + 66657 0.69 0.77358
Target:  5'- gGAUGCuGCGCgucuccucgGUCAGCGAGcG-CAGCCGc -3'
miRNA:   3'- -CUGCG-CGUG---------UAGUCGCUC-CaGUCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.