miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15700 5' -57.4 NC_004065.1 + 131442 0.67 0.879046
Target:  5'- -uCGCGCcgccgAUGUCAG-GGGGUCGGUCAu -3'
miRNA:   3'- cuGCGCG-----UGUAGUCgCUCCAGUCGGU- -5'
15700 5' -57.4 NC_004065.1 + 221340 0.67 0.879046
Target:  5'- uACGCGCACGguacguuugaccUCAGaCGAaGUCAGUCu -3'
miRNA:   3'- cUGCGCGUGU------------AGUC-GCUcCAGUCGGu -5'
15700 5' -57.4 NC_004065.1 + 62807 0.67 0.872022
Target:  5'- -uUGUGCAaAUCAGCGAGGUU-GCUg -3'
miRNA:   3'- cuGCGCGUgUAGUCGCUCCAGuCGGu -5'
15700 5' -57.4 NC_004065.1 + 148532 0.67 0.869875
Target:  5'- gGACGUGCACAcCAGCuugaugcagcucuuGcagaucauccGGGUCAGCCc -3'
miRNA:   3'- -CUGCGCGUGUaGUCG--------------C----------UCCAGUCGGu -5'
15700 5' -57.4 NC_004065.1 + 225057 0.67 0.864794
Target:  5'- --aGCGCACGUC-GUGAuGG-CGGCCGc -3'
miRNA:   3'- cugCGCGUGUAGuCGCU-CCaGUCGGU- -5'
15700 5' -57.4 NC_004065.1 + 127569 0.67 0.858118
Target:  5'- uGACGCGCGCAgUCGGCGAcuuaacuauuaaAGCCGg -3'
miRNA:   3'- -CUGCGCGUGU-AGUCGCUccag--------UCGGU- -5'
15700 5' -57.4 NC_004065.1 + 146754 0.67 0.857367
Target:  5'- uAUGUGgGCGUCGGCGGcGUCuGCCGc -3'
miRNA:   3'- cUGCGCgUGUAGUCGCUcCAGuCGGU- -5'
15700 5' -57.4 NC_004065.1 + 45539 0.67 0.857367
Target:  5'- cGGCGC-CGCggCGGCGGcGG-CAGCCGc -3'
miRNA:   3'- -CUGCGcGUGuaGUCGCU-CCaGUCGGU- -5'
15700 5' -57.4 NC_004065.1 + 135532 0.67 0.849747
Target:  5'- aGACGCGUu--UCAGCGcgaaccuGGcCAGCCGg -3'
miRNA:   3'- -CUGCGCGuguAGUCGCu------CCaGUCGGU- -5'
15700 5' -57.4 NC_004065.1 + 201629 0.67 0.849747
Target:  5'- cGACGUgGCACccccCGGCGAGGcgCAGCUc -3'
miRNA:   3'- -CUGCG-CGUGua--GUCGCUCCa-GUCGGu -5'
15700 5' -57.4 NC_004065.1 + 60562 0.67 0.848975
Target:  5'- uGACGCucuaucgcgaccuGCACAUCGGgGucGUCGGCUu -3'
miRNA:   3'- -CUGCG-------------CGUGUAGUCgCucCAGUCGGu -5'
15700 5' -57.4 NC_004065.1 + 117404 0.68 0.84194
Target:  5'- cGCGCGCGCugggcucgCGGCGcGGaguggCAGCCGa -3'
miRNA:   3'- cUGCGCGUGua------GUCGCuCCa----GUCGGU- -5'
15700 5' -57.4 NC_004065.1 + 227530 0.68 0.825791
Target:  5'- --aGCGgACGUCGG-GGGGUCGGUCu -3'
miRNA:   3'- cugCGCgUGUAGUCgCUCCAGUCGGu -5'
15700 5' -57.4 NC_004065.1 + 85798 0.68 0.817463
Target:  5'- aGGCGCGagaaccgGCGUCGGCGAGaGUCucgAGUCGa -3'
miRNA:   3'- -CUGCGCg------UGUAGUCGCUC-CAG---UCGGU- -5'
15700 5' -57.4 NC_004065.1 + 97766 0.68 0.817462
Target:  5'- -uCGCGCGCAUCGuCGGGGUgAuccGCCGc -3'
miRNA:   3'- cuGCGCGUGUAGUcGCUCCAgU---CGGU- -5'
15700 5' -57.4 NC_004065.1 + 124705 0.68 0.808974
Target:  5'- cGGCGCGC-CGUCGGCGGGcuUCgAGUCGc -3'
miRNA:   3'- -CUGCGCGuGUAGUCGCUCc-AG-UCGGU- -5'
15700 5' -57.4 NC_004065.1 + 96264 0.68 0.800334
Target:  5'- gGAUGCGgAUGgaCGGCGGGG-CGGCCAg -3'
miRNA:   3'- -CUGCGCgUGUa-GUCGCUCCaGUCGGU- -5'
15700 5' -57.4 NC_004065.1 + 23898 0.69 0.79155
Target:  5'- aACGgGCuccuGCGUCGGCccGAGGcCAGCCGc -3'
miRNA:   3'- cUGCgCG----UGUAGUCG--CUCCaGUCGGU- -5'
15700 5' -57.4 NC_004065.1 + 82150 0.69 0.79155
Target:  5'- gGACGCuGUACcUCcuGGCGAGGcacCAGCCGa -3'
miRNA:   3'- -CUGCG-CGUGuAG--UCGCUCCa--GUCGGU- -5'
15700 5' -57.4 NC_004065.1 + 127746 0.69 0.79155
Target:  5'- cGACGCGCGCcuuguccucGUCGGUGgcgccggggucGGGUCccgcGGCCAu -3'
miRNA:   3'- -CUGCGCGUG---------UAGUCGC-----------UCCAG----UCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.