miRNA display CGI


Results 1 - 20 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15700 5' -57.4 NC_004065.1 + 132 0.72 0.598354
Target:  5'- uGCGCGCACGUCAcCGAGGgcguggCAccguGCCAa -3'
miRNA:   3'- cUGCGCGUGUAGUcGCUCCa-----GU----CGGU- -5'
15700 5' -57.4 NC_004065.1 + 461 0.66 0.916685
Target:  5'- aGACGCGCGC-UC-GCcuGaGUCAGCCu -3'
miRNA:   3'- -CUGCGCGUGuAGuCGcuC-CAGUCGGu -5'
15700 5' -57.4 NC_004065.1 + 493 0.66 0.905019
Target:  5'- cGCGCGcCGCGUCcgcgggaaGGCGGGGUgAGgCGc -3'
miRNA:   3'- cUGCGC-GUGUAG--------UCGCUCCAgUCgGU- -5'
15700 5' -57.4 NC_004065.1 + 10640 0.67 0.885862
Target:  5'- -cCGCGCACA-CGcGCGAGGUacgAGUCGa -3'
miRNA:   3'- cuGCGCGUGUaGU-CGCUCCAg--UCGGU- -5'
15700 5' -57.4 NC_004065.1 + 16855 0.71 0.658075
Target:  5'- -cUGCGCACGcaCGGCGAGGgcgAGCCAg -3'
miRNA:   3'- cuGCGCGUGUa-GUCGCUCCag-UCGGU- -5'
15700 5' -57.4 NC_004065.1 + 22322 0.66 0.922181
Target:  5'- --aGCG-ACAUCAGCGGGGUgAaaagacGCCGu -3'
miRNA:   3'- cugCGCgUGUAGUCGCUCCAgU------CGGU- -5'
15700 5' -57.4 NC_004065.1 + 23898 0.69 0.79155
Target:  5'- aACGgGCuccuGCGUCGGCccGAGGcCAGCCGc -3'
miRNA:   3'- cUGCgCG----UGUAGUCG--CUCCaGUCGGU- -5'
15700 5' -57.4 NC_004065.1 + 25767 0.72 0.588442
Target:  5'- uGCGCGCGCA-CGGCGAgaccgucguGGUC-GCCAg -3'
miRNA:   3'- cUGCGCGUGUaGUCGCU---------CCAGuCGGU- -5'
15700 5' -57.4 NC_004065.1 + 28612 0.67 0.879046
Target:  5'- cGGCGCGCGaa--AGCGAGGcugCGGCg- -3'
miRNA:   3'- -CUGCGCGUguagUCGCUCCa--GUCGgu -5'
15700 5' -57.4 NC_004065.1 + 38894 0.69 0.78173
Target:  5'- gGGCGCGUACAUCGugaugggaucGuCGGGGcuuucgcUCGGCCAg -3'
miRNA:   3'- -CUGCGCGUGUAGU----------C-GCUCC-------AGUCGGU- -5'
15700 5' -57.4 NC_004065.1 + 42332 1.08 0.003435
Target:  5'- cGACGCGCACAUCAGCGAGGUCAGCCAc -3'
miRNA:   3'- -CUGCGCGUGUAGUCGCUCCAGUCGGU- -5'
15700 5' -57.4 NC_004065.1 + 45539 0.67 0.857367
Target:  5'- cGGCGC-CGCggCGGCGGcGG-CAGCCGc -3'
miRNA:   3'- -CUGCGcGUGuaGUCGCU-CCaGUCGGU- -5'
15700 5' -57.4 NC_004065.1 + 47708 0.66 0.890507
Target:  5'- uGACGCuGCGCAUCcccucgAGCGuggccuugaucacgGGGUCagaGGCCAu -3'
miRNA:   3'- -CUGCG-CGUGUAG------UCGC--------------UCCAG---UCGGU- -5'
15700 5' -57.4 NC_004065.1 + 47951 0.71 0.687769
Target:  5'- gGAUGCGCAgCGUCA-UGAGGUCGGUgGa -3'
miRNA:   3'- -CUGCGCGU-GUAGUcGCUCCAGUCGgU- -5'
15700 5' -57.4 NC_004065.1 + 60562 0.67 0.848975
Target:  5'- uGACGCucuaucgcgaccuGCACAUCGGgGucGUCGGCUu -3'
miRNA:   3'- -CUGCG-------------CGUGUAGUCgCucCAGUCGGu -5'
15700 5' -57.4 NC_004065.1 + 60902 0.71 0.668003
Target:  5'- cGACGCGUGCGUgGcGCGGGGcaacaCGGCCGu -3'
miRNA:   3'- -CUGCGCGUGUAgU-CGCUCCa----GUCGGU- -5'
15700 5' -57.4 NC_004065.1 + 61712 0.72 0.608288
Target:  5'- uGGCGCaGCGCAUCacggAGCG-GGUCgGGCCGg -3'
miRNA:   3'- -CUGCG-CGUGUAG----UCGCuCCAG-UCGGU- -5'
15700 5' -57.4 NC_004065.1 + 62807 0.67 0.872022
Target:  5'- -uUGUGCAaAUCAGCGAGGUU-GCUg -3'
miRNA:   3'- cuGCGCGUgUAGUCGCUCCAGuCGGu -5'
15700 5' -57.4 NC_004065.1 + 66657 0.69 0.77358
Target:  5'- gGAUGCuGCGCgucuccucgGUCAGCGAGcG-CAGCCGc -3'
miRNA:   3'- -CUGCG-CGUG---------UAGUCGCUC-CaGUCGGU- -5'
15700 5' -57.4 NC_004065.1 + 68172 0.67 0.879046
Target:  5'- cGGCGCGCGCGaCGGaGcuGUCGGCCc -3'
miRNA:   3'- -CUGCGCGUGUaGUCgCucCAGUCGGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.