miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15700 5' -57.4 NC_004065.1 + 68172 0.67 0.879046
Target:  5'- cGGCGCGCGCGaCGGaGcuGUCGGCCc -3'
miRNA:   3'- -CUGCGCGUGUaGUCgCucCAGUCGGu -5'
15700 5' -57.4 NC_004065.1 + 82150 0.69 0.79155
Target:  5'- gGACGCuGUACcUCcuGGCGAGGcacCAGCCGa -3'
miRNA:   3'- -CUGCG-CGUGuAG--UCGCUCCa--GUCGGU- -5'
15700 5' -57.4 NC_004065.1 + 96264 0.68 0.800334
Target:  5'- gGAUGCGgAUGgaCGGCGGGG-CGGCCAg -3'
miRNA:   3'- -CUGCGCgUGUa-GUCGCUCCaGUCGGU- -5'
15700 5' -57.4 NC_004065.1 + 85798 0.68 0.817463
Target:  5'- aGGCGCGagaaccgGCGUCGGCGAGaGUCucgAGUCGa -3'
miRNA:   3'- -CUGCGCg------UGUAGUCGCUC-CAG---UCGGU- -5'
15700 5' -57.4 NC_004065.1 + 117404 0.68 0.84194
Target:  5'- cGCGCGCGCugggcucgCGGCGcGGaguggCAGCCGa -3'
miRNA:   3'- cUGCGCGUGua------GUCGCuCCa----GUCGGU- -5'
15700 5' -57.4 NC_004065.1 + 146754 0.67 0.857367
Target:  5'- uAUGUGgGCGUCGGCGGcGUCuGCCGc -3'
miRNA:   3'- cUGCGCgUGUAGUCGCUcCAGuCGGU- -5'
15700 5' -57.4 NC_004065.1 + 45539 0.67 0.857367
Target:  5'- cGGCGC-CGCggCGGCGGcGG-CAGCCGc -3'
miRNA:   3'- -CUGCGcGUGuaGUCGCU-CCaGUCGGU- -5'
15700 5' -57.4 NC_004065.1 + 225057 0.67 0.864794
Target:  5'- --aGCGCACGUC-GUGAuGG-CGGCCGc -3'
miRNA:   3'- cugCGCGUGUAGuCGCU-CCaGUCGGU- -5'
15700 5' -57.4 NC_004065.1 + 148532 0.67 0.869875
Target:  5'- gGACGUGCACAcCAGCuugaugcagcucuuGcagaucauccGGGUCAGCCc -3'
miRNA:   3'- -CUGCGCGUGUaGUCG--------------C----------UCCAGUCGGu -5'
15700 5' -57.4 NC_004065.1 + 75660 0.69 0.782629
Target:  5'- --aGUGgAgGUCGGCGAGG-CGGCCGc -3'
miRNA:   3'- cugCGCgUgUAGUCGCUCCaGUCGGU- -5'
15700 5' -57.4 NC_004065.1 + 115065 0.69 0.773581
Target:  5'- cGGCGCGCGCGaggacgCGGCcucGGUCGGCUc -3'
miRNA:   3'- -CUGCGCGUGUa-----GUCGcu-CCAGUCGGu -5'
15700 5' -57.4 NC_004065.1 + 199582 0.7 0.717069
Target:  5'- aGACGC-CGCuUCGGC-AGGUCAGCUu -3'
miRNA:   3'- -CUGCGcGUGuAGUCGcUCCAGUCGGu -5'
15700 5' -57.4 NC_004065.1 + 106950 0.72 0.575604
Target:  5'- gGAUGCGa--GUCgaacggagcaaaaaAGCGAGGUCGGCCAu -3'
miRNA:   3'- -CUGCGCgugUAG--------------UCGCUCCAGUCGGU- -5'
15700 5' -57.4 NC_004065.1 + 132 0.72 0.598354
Target:  5'- uGCGCGCACGUCAcCGAGGgcguggCAccguGCCAa -3'
miRNA:   3'- cUGCGCGUGUAGUcGCUCCa-----GU----CGGU- -5'
15700 5' -57.4 NC_004065.1 + 208043 0.72 0.598354
Target:  5'- cGACGCaGCACGcUCAGauCGAGGUCGGUg- -3'
miRNA:   3'- -CUGCG-CGUGU-AGUC--GCUCCAGUCGgu -5'
15700 5' -57.4 NC_004065.1 + 134442 0.72 0.604312
Target:  5'- aACGCGCugcagaaggugccCAUCAGCGucauAGGUCAGCUg -3'
miRNA:   3'- cUGCGCGu------------GUAGUCGC----UCCAGUCGGu -5'
15700 5' -57.4 NC_004065.1 + 150415 0.72 0.61824
Target:  5'- -cCGCGCGCG-CAGCG-GGUcCGGCCu -3'
miRNA:   3'- cuGCGCGUGUaGUCGCuCCA-GUCGGu -5'
15700 5' -57.4 NC_004065.1 + 16855 0.71 0.658075
Target:  5'- -cUGCGCACGcaCGGCGAGGgcgAGCCAg -3'
miRNA:   3'- cuGCGCGUGUa-GUCGCUCCag-UCGGU- -5'
15700 5' -57.4 NC_004065.1 + 195313 0.71 0.677904
Target:  5'- -uCGCGCAuCGUCAGCGAGuagaGUCGcugcGCCAg -3'
miRNA:   3'- cuGCGCGU-GUAGUCGCUC----CAGU----CGGU- -5'
15700 5' -57.4 NC_004065.1 + 196192 0.7 0.70736
Target:  5'- uGGCGCGCAC---GGCGuGGUUgauGGCCAg -3'
miRNA:   3'- -CUGCGCGUGuagUCGCuCCAG---UCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.