miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15701 5' -53.8 NC_004065.1 + 98623 0.65 0.987654
Target:  5'- uGGUU-UCGCCGCCUucggugcGCUcggUCGCUCg -3'
miRNA:   3'- cCUAGuAGCGGUGGA-------CGAca-AGCGAG- -5'
15701 5' -53.8 NC_004065.1 + 78856 0.65 0.987654
Target:  5'- gGGGUgGUCGaccucuuuucugcCCGCCgucGCUGUugccacugUCGCUCc -3'
miRNA:   3'- -CCUAgUAGC-------------GGUGGa--CGACA--------AGCGAG- -5'
15701 5' -53.8 NC_004065.1 + 74424 0.66 0.98625
Target:  5'- cGGUCAUcggcucgaaCGCCGCCUGCgggGUUCu--- -3'
miRNA:   3'- cCUAGUA---------GCGGUGGACGa--CAAGcgag -5'
15701 5' -53.8 NC_004065.1 + 48852 0.66 0.98625
Target:  5'- cGGuGUCAUCGCCAgccuCCUGgaGgcCGaCUCc -3'
miRNA:   3'- -CC-UAGUAGCGGU----GGACgaCaaGC-GAG- -5'
15701 5' -53.8 NC_004065.1 + 135627 0.66 0.98455
Target:  5'- cGGGUCuacggCGCCACCaGCcGacaGCUCg -3'
miRNA:   3'- -CCUAGua---GCGGUGGaCGaCaagCGAG- -5'
15701 5' -53.8 NC_004065.1 + 77388 0.66 0.982694
Target:  5'- cGGGUCG-CGCCGCaggcagaUGCUGacgaUCGCg- -3'
miRNA:   3'- -CCUAGUaGCGGUGg------ACGACa---AGCGag -5'
15701 5' -53.8 NC_004065.1 + 176238 0.66 0.982694
Target:  5'- cGGA-CcgCGCagACCUGCUGg--GCUCg -3'
miRNA:   3'- -CCUaGuaGCGg-UGGACGACaagCGAG- -5'
15701 5' -53.8 NC_004065.1 + 17703 0.66 0.980675
Target:  5'- uGGccGUCGUCGUCGCuUUGUUGUUgCGcCUCa -3'
miRNA:   3'- -CC--UAGUAGCGGUG-GACGACAA-GC-GAG- -5'
15701 5' -53.8 NC_004065.1 + 111124 0.66 0.978485
Target:  5'- --uUCGUCGCCAUCUgGCUcGUgCGCgUCg -3'
miRNA:   3'- ccuAGUAGCGGUGGA-CGA-CAaGCG-AG- -5'
15701 5' -53.8 NC_004065.1 + 91950 0.66 0.978485
Target:  5'- cGGA-CAUCGUgGCC-GCgaugUCGCUCu -3'
miRNA:   3'- -CCUaGUAGCGgUGGaCGaca-AGCGAG- -5'
15701 5' -53.8 NC_004065.1 + 58390 0.66 0.978485
Target:  5'- cGAUU-UCGCCGCCUGCg--UCGaUCa -3'
miRNA:   3'- cCUAGuAGCGGUGGACGacaAGCgAG- -5'
15701 5' -53.8 NC_004065.1 + 54431 0.66 0.978256
Target:  5'- aGGGU--UCGCCucaGCCUcucgcucGCUGUUCGCg- -3'
miRNA:   3'- -CCUAguAGCGG---UGGA-------CGACAAGCGag -5'
15701 5' -53.8 NC_004065.1 + 109826 0.67 0.975118
Target:  5'- --cUCGUCGCCGuCCUGCUGcggcggggggccaUCGCg- -3'
miRNA:   3'- ccuAGUAGCGGU-GGACGACa------------AGCGag -5'
15701 5' -53.8 NC_004065.1 + 176185 0.67 0.973563
Target:  5'- cGGGUCGUCGCaACCgGCagUGUUaacaGUUCa -3'
miRNA:   3'- -CCUAGUAGCGgUGGaCG--ACAAg---CGAG- -5'
15701 5' -53.8 NC_004065.1 + 110069 0.67 0.97276
Target:  5'- aGGUCGggGCUcacggccguccucuGCCUGCUGUUC-CUCu -3'
miRNA:   3'- cCUAGUagCGG--------------UGGACGACAAGcGAG- -5'
15701 5' -53.8 NC_004065.1 + 24329 0.67 0.970818
Target:  5'- cGGcAUCAUCaucgaGCCGCUcaUGCUGccgcCGCUCa -3'
miRNA:   3'- -CC-UAGUAG-----CGGUGG--ACGACaa--GCGAG- -5'
15701 5' -53.8 NC_004065.1 + 128669 0.67 0.970818
Target:  5'- cGGuggCggCGCCGCCgccGCUGc-CGCUCg -3'
miRNA:   3'- -CCua-GuaGCGGUGGa--CGACaaGCGAG- -5'
15701 5' -53.8 NC_004065.1 + 167693 0.68 0.961364
Target:  5'- uGAUCGUCGCCGucuccgagcUCUGCUGca-GUUCu -3'
miRNA:   3'- cCUAGUAGCGGU---------GGACGACaagCGAG- -5'
15701 5' -53.8 NC_004065.1 + 65886 0.68 0.961364
Target:  5'- ---aCAUCuGCCGCCUGCUGaugcCGCg- -3'
miRNA:   3'- ccuaGUAG-CGGUGGACGACaa--GCGag -5'
15701 5' -53.8 NC_004065.1 + 76778 0.68 0.961364
Target:  5'- cGGcgCAUCGCCGCCgcgacgGCgaa-CGCUa -3'
miRNA:   3'- -CCuaGUAGCGGUGGa-----CGacaaGCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.