miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15701 5' -53.8 NC_004065.1 + 44278 1.13 0.003779
Target:  5'- cGGAUCAUCGCCACCUGCUGUUCGCUCa -3'
miRNA:   3'- -CCUAGUAGCGGUGGACGACAAGCGAG- -5'
15701 5' -53.8 NC_004065.1 + 54643 0.81 0.337198
Target:  5'- gGGAUCGUCGuCCGCCUGCUGc-CGCa- -3'
miRNA:   3'- -CCUAGUAGC-GGUGGACGACaaGCGag -5'
15701 5' -53.8 NC_004065.1 + 120358 0.75 0.650183
Target:  5'- gGGGUaCGUCGgCGCCUGaC-GUUCGCUCu -3'
miRNA:   3'- -CCUA-GUAGCgGUGGAC-GaCAAGCGAG- -5'
15701 5' -53.8 NC_004065.1 + 112795 0.75 0.68048
Target:  5'- aGGuGUgAUCGCCgACCUGCUGagcggagCGCUCg -3'
miRNA:   3'- -CC-UAgUAGCGG-UGGACGACaa-----GCGAG- -5'
15701 5' -53.8 NC_004065.1 + 57760 0.74 0.710424
Target:  5'- aGAUCGUCGUCGCCgccGCcg-UCGCUCu -3'
miRNA:   3'- cCUAGUAGCGGUGGa--CGacaAGCGAG- -5'
15701 5' -53.8 NC_004065.1 + 88997 0.74 0.710424
Target:  5'- -cAUCAUCGCCACCaaGCUGguggacgUGCUCa -3'
miRNA:   3'- ccUAGUAGCGGUGGa-CGACaa-----GCGAG- -5'
15701 5' -53.8 NC_004065.1 + 72815 0.73 0.749393
Target:  5'- aGGAUCGguugCGCCACCUGCUGa------ -3'
miRNA:   3'- -CCUAGUa---GCGGUGGACGACaagcgag -5'
15701 5' -53.8 NC_004065.1 + 68830 0.73 0.786743
Target:  5'- uGGAUCGcCGCCGCC-GCg--UUGCUCg -3'
miRNA:   3'- -CCUAGUaGCGGUGGaCGacaAGCGAG- -5'
15701 5' -53.8 NC_004065.1 + 161519 0.72 0.813352
Target:  5'- gGGAgaugCGUcCGCCgccucaccugaGCCUGCUcggccGUUCGCUCa -3'
miRNA:   3'- -CCUa---GUA-GCGG-----------UGGACGA-----CAAGCGAG- -5'
15701 5' -53.8 NC_004065.1 + 114019 0.71 0.862007
Target:  5'- cGGUCGUCuGCCGCCgcgGCUGUcC-CUCg -3'
miRNA:   3'- cCUAGUAG-CGGUGGa--CGACAaGcGAG- -5'
15701 5' -53.8 NC_004065.1 + 145378 0.7 0.897035
Target:  5'- uGGccAUCGcgUGCUGCCUGCUG-UCGUUCg -3'
miRNA:   3'- -CC--UAGUa-GCGGUGGACGACaAGCGAG- -5'
15701 5' -53.8 NC_004065.1 + 88929 0.7 0.903376
Target:  5'- cGGA-CGUCGuCCGCUcgcgggUGCUGgcggCGCUCg -3'
miRNA:   3'- -CCUaGUAGC-GGUGG------ACGACaa--GCGAG- -5'
15701 5' -53.8 NC_004065.1 + 105317 0.69 0.915368
Target:  5'- uGAUgcUCGCCACCU-CUGUUCcCUCg -3'
miRNA:   3'- cCUAguAGCGGUGGAcGACAAGcGAG- -5'
15701 5' -53.8 NC_004065.1 + 22466 0.69 0.921014
Target:  5'- cGGUCAUCGCgACCgucggaauuCUGUUCGCcgUCa -3'
miRNA:   3'- cCUAGUAGCGgUGGac-------GACAAGCG--AG- -5'
15701 5' -53.8 NC_004065.1 + 189850 0.69 0.931603
Target:  5'- gGGAccugcUCGUCGCCGCgaGggGUUUGCUg -3'
miRNA:   3'- -CCU-----AGUAGCGGUGgaCgaCAAGCGAg -5'
15701 5' -53.8 NC_004065.1 + 98877 0.68 0.94573
Target:  5'- gGGGUCGUCGUCGCCcacg---CGCUCg -3'
miRNA:   3'- -CCUAGUAGCGGUGGacgacaaGCGAG- -5'
15701 5' -53.8 NC_004065.1 + 137258 0.68 0.94573
Target:  5'- gGGAUC-UCGUCGCCcucGCUGUUC-CUg -3'
miRNA:   3'- -CCUAGuAGCGGUGGa--CGACAAGcGAg -5'
15701 5' -53.8 NC_004065.1 + 193289 0.68 0.949976
Target:  5'- gGGAcugaaGUCGCCAacagagUCUGCUGUaaGCUCg -3'
miRNA:   3'- -CCUag---UAGCGGU------GGACGACAagCGAG- -5'
15701 5' -53.8 NC_004065.1 + 149079 0.68 0.949976
Target:  5'- gGGGUCGUCGUCACgaucgucuuCUGCUGgggacgguaaUUCGC-Cg -3'
miRNA:   3'- -CCUAGUAGCGGUG---------GACGAC----------AAGCGaG- -5'
15701 5' -53.8 NC_004065.1 + 97544 0.68 0.949976
Target:  5'- cGAUCAgCGCCagcGCCUGCUGcagcgggUGCUUg -3'
miRNA:   3'- cCUAGUaGCGG---UGGACGACaa-----GCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.