Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15701 | 5' | -53.8 | NC_004065.1 | + | 180120 | 0.68 | 0.961017 |
Target: 5'- aGGAUCAuacucuaUCuCCugCUGCUGUUgcUGUUCu -3' miRNA: 3'- -CCUAGU-------AGcGGugGACGACAA--GCGAG- -5' |
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15701 | 5' | -53.8 | NC_004065.1 | + | 70371 | 0.68 | 0.960315 |
Target: 5'- cGAUCggCGCCGCCgccgccgcugccggUGCUGcucgUCGcCUCg -3' miRNA: 3'- cCUAGuaGCGGUGG--------------ACGACa---AGC-GAG- -5' |
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15701 | 5' | -53.8 | NC_004065.1 | + | 196820 | 0.68 | 0.957789 |
Target: 5'- gGGGUCGUgGUCACCUGCggcaggUGCg- -3' miRNA: 3'- -CCUAGUAgCGGUGGACGacaa--GCGag -5' |
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15701 | 5' | -53.8 | NC_004065.1 | + | 56860 | 0.68 | 0.957789 |
Target: 5'- -cAUCcgCgGCCGCCUGC---UCGCUCg -3' miRNA: 3'- ccUAGuaG-CGGUGGACGacaAGCGAG- -5' |
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15701 | 5' | -53.8 | NC_004065.1 | + | 59390 | 0.68 | 0.957789 |
Target: 5'- ---cCGUCGUCGCCUcGCgc-UCGCUCg -3' miRNA: 3'- ccuaGUAGCGGUGGA-CGacaAGCGAG- -5' |
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15701 | 5' | -53.8 | NC_004065.1 | + | 149079 | 0.68 | 0.949976 |
Target: 5'- gGGGUCGUCGUCACgaucgucuuCUGCUGgggacgguaaUUCGC-Cg -3' miRNA: 3'- -CCUAGUAGCGGUG---------GACGAC----------AAGCGaG- -5' |
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15701 | 5' | -53.8 | NC_004065.1 | + | 97544 | 0.68 | 0.949976 |
Target: 5'- cGAUCAgCGCCagcGCCUGCUGcagcgggUGCUUg -3' miRNA: 3'- cCUAGUaGCGG---UGGACGACaa-----GCGAG- -5' |
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15701 | 5' | -53.8 | NC_004065.1 | + | 193289 | 0.68 | 0.949976 |
Target: 5'- gGGAcugaaGUCGCCAacagagUCUGCUGUaaGCUCg -3' miRNA: 3'- -CCUag---UAGCGGU------GGACGACAagCGAG- -5' |
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15701 | 5' | -53.8 | NC_004065.1 | + | 137258 | 0.68 | 0.94573 |
Target: 5'- gGGAUC-UCGUCGCCcucGCUGUUC-CUg -3' miRNA: 3'- -CCUAGuAGCGGUGGa--CGACAAGcGAg -5' |
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15701 | 5' | -53.8 | NC_004065.1 | + | 98877 | 0.68 | 0.94573 |
Target: 5'- gGGGUCGUCGUCGCCcacg---CGCUCg -3' miRNA: 3'- -CCUAGUAGCGGUGGacgacaaGCGAG- -5' |
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15701 | 5' | -53.8 | NC_004065.1 | + | 189850 | 0.69 | 0.931603 |
Target: 5'- gGGAccugcUCGUCGCCGCgaGggGUUUGCUg -3' miRNA: 3'- -CCU-----AGUAGCGGUGgaCgaCAAGCGAg -5' |
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15701 | 5' | -53.8 | NC_004065.1 | + | 22466 | 0.69 | 0.921014 |
Target: 5'- cGGUCAUCGCgACCgucggaauuCUGUUCGCcgUCa -3' miRNA: 3'- cCUAGUAGCGgUGGac-------GACAAGCG--AG- -5' |
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15701 | 5' | -53.8 | NC_004065.1 | + | 105317 | 0.69 | 0.915368 |
Target: 5'- uGAUgcUCGCCACCU-CUGUUCcCUCg -3' miRNA: 3'- cCUAguAGCGGUGGAcGACAAGcGAG- -5' |
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15701 | 5' | -53.8 | NC_004065.1 | + | 88929 | 0.7 | 0.903376 |
Target: 5'- cGGA-CGUCGuCCGCUcgcgggUGCUGgcggCGCUCg -3' miRNA: 3'- -CCUaGUAGC-GGUGG------ACGACaa--GCGAG- -5' |
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15701 | 5' | -53.8 | NC_004065.1 | + | 145378 | 0.7 | 0.897035 |
Target: 5'- uGGccAUCGcgUGCUGCCUGCUG-UCGUUCg -3' miRNA: 3'- -CC--UAGUa-GCGGUGGACGACaAGCGAG- -5' |
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15701 | 5' | -53.8 | NC_004065.1 | + | 114019 | 0.71 | 0.862007 |
Target: 5'- cGGUCGUCuGCCGCCgcgGCUGUcC-CUCg -3' miRNA: 3'- cCUAGUAG-CGGUGGa--CGACAaGcGAG- -5' |
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15701 | 5' | -53.8 | NC_004065.1 | + | 161519 | 0.72 | 0.813352 |
Target: 5'- gGGAgaugCGUcCGCCgccucaccugaGCCUGCUcggccGUUCGCUCa -3' miRNA: 3'- -CCUa---GUA-GCGG-----------UGGACGA-----CAAGCGAG- -5' |
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15701 | 5' | -53.8 | NC_004065.1 | + | 68830 | 0.73 | 0.786743 |
Target: 5'- uGGAUCGcCGCCGCC-GCg--UUGCUCg -3' miRNA: 3'- -CCUAGUaGCGGUGGaCGacaAGCGAG- -5' |
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15701 | 5' | -53.8 | NC_004065.1 | + | 72815 | 0.73 | 0.749393 |
Target: 5'- aGGAUCGguugCGCCACCUGCUGa------ -3' miRNA: 3'- -CCUAGUa---GCGGUGGACGACaagcgag -5' |
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15701 | 5' | -53.8 | NC_004065.1 | + | 88997 | 0.74 | 0.710424 |
Target: 5'- -cAUCAUCGCCACCaaGCUGguggacgUGCUCa -3' miRNA: 3'- ccUAGUAGCGGUGGa-CGACaa-----GCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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