Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15701 | 5' | -53.8 | NC_004065.1 | + | 17703 | 0.66 | 0.980675 |
Target: 5'- uGGccGUCGUCGUCGCuUUGUUGUUgCGcCUCa -3' miRNA: 3'- -CC--UAGUAGCGGUG-GACGACAA-GC-GAG- -5' |
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15701 | 5' | -53.8 | NC_004065.1 | + | 22466 | 0.69 | 0.921014 |
Target: 5'- cGGUCAUCGCgACCgucggaauuCUGUUCGCcgUCa -3' miRNA: 3'- cCUAGUAGCGgUGGac-------GACAAGCG--AG- -5' |
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15701 | 5' | -53.8 | NC_004065.1 | + | 24329 | 0.67 | 0.970818 |
Target: 5'- cGGcAUCAUCaucgaGCCGCUcaUGCUGccgcCGCUCa -3' miRNA: 3'- -CC-UAGUAG-----CGGUGG--ACGACaa--GCGAG- -5' |
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15701 | 5' | -53.8 | NC_004065.1 | + | 44278 | 1.13 | 0.003779 |
Target: 5'- cGGAUCAUCGCCACCUGCUGUUCGCUCa -3' miRNA: 3'- -CCUAGUAGCGGUGGACGACAAGCGAG- -5' |
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15701 | 5' | -53.8 | NC_004065.1 | + | 48852 | 0.66 | 0.98625 |
Target: 5'- cGGuGUCAUCGCCAgccuCCUGgaGgcCGaCUCc -3' miRNA: 3'- -CC-UAGUAGCGGU----GGACgaCaaGC-GAG- -5' |
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15701 | 5' | -53.8 | NC_004065.1 | + | 54431 | 0.66 | 0.978256 |
Target: 5'- aGGGU--UCGCCucaGCCUcucgcucGCUGUUCGCg- -3' miRNA: 3'- -CCUAguAGCGG---UGGA-------CGACAAGCGag -5' |
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15701 | 5' | -53.8 | NC_004065.1 | + | 54643 | 0.81 | 0.337198 |
Target: 5'- gGGAUCGUCGuCCGCCUGCUGc-CGCa- -3' miRNA: 3'- -CCUAGUAGC-GGUGGACGACaaGCGag -5' |
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15701 | 5' | -53.8 | NC_004065.1 | + | 56860 | 0.68 | 0.957789 |
Target: 5'- -cAUCcgCgGCCGCCUGC---UCGCUCg -3' miRNA: 3'- ccUAGuaG-CGGUGGACGacaAGCGAG- -5' |
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15701 | 5' | -53.8 | NC_004065.1 | + | 57760 | 0.74 | 0.710424 |
Target: 5'- aGAUCGUCGUCGCCgccGCcg-UCGCUCu -3' miRNA: 3'- cCUAGUAGCGGUGGa--CGacaAGCGAG- -5' |
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15701 | 5' | -53.8 | NC_004065.1 | + | 58390 | 0.66 | 0.978485 |
Target: 5'- cGAUU-UCGCCGCCUGCg--UCGaUCa -3' miRNA: 3'- cCUAGuAGCGGUGGACGacaAGCgAG- -5' |
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15701 | 5' | -53.8 | NC_004065.1 | + | 59390 | 0.68 | 0.957789 |
Target: 5'- ---cCGUCGUCGCCUcGCgc-UCGCUCg -3' miRNA: 3'- ccuaGUAGCGGUGGA-CGacaAGCGAG- -5' |
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15701 | 5' | -53.8 | NC_004065.1 | + | 65886 | 0.68 | 0.961364 |
Target: 5'- ---aCAUCuGCCGCCUGCUGaugcCGCg- -3' miRNA: 3'- ccuaGUAG-CGGUGGACGACaa--GCGag -5' |
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15701 | 5' | -53.8 | NC_004065.1 | + | 68830 | 0.73 | 0.786743 |
Target: 5'- uGGAUCGcCGCCGCC-GCg--UUGCUCg -3' miRNA: 3'- -CCUAGUaGCGGUGGaCGacaAGCGAG- -5' |
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15701 | 5' | -53.8 | NC_004065.1 | + | 70371 | 0.68 | 0.960315 |
Target: 5'- cGAUCggCGCCGCCgccgccgcugccggUGCUGcucgUCGcCUCg -3' miRNA: 3'- cCUAGuaGCGGUGG--------------ACGACa---AGC-GAG- -5' |
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15701 | 5' | -53.8 | NC_004065.1 | + | 72815 | 0.73 | 0.749393 |
Target: 5'- aGGAUCGguugCGCCACCUGCUGa------ -3' miRNA: 3'- -CCUAGUa---GCGGUGGACGACaagcgag -5' |
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15701 | 5' | -53.8 | NC_004065.1 | + | 74424 | 0.66 | 0.98625 |
Target: 5'- cGGUCAUcggcucgaaCGCCGCCUGCgggGUUCu--- -3' miRNA: 3'- cCUAGUA---------GCGGUGGACGa--CAAGcgag -5' |
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15701 | 5' | -53.8 | NC_004065.1 | + | 76778 | 0.68 | 0.961364 |
Target: 5'- cGGcgCAUCGCCGCCgcgacgGCgaa-CGCUa -3' miRNA: 3'- -CCuaGUAGCGGUGGa-----CGacaaGCGAg -5' |
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15701 | 5' | -53.8 | NC_004065.1 | + | 77388 | 0.66 | 0.982694 |
Target: 5'- cGGGUCG-CGCCGCaggcagaUGCUGacgaUCGCg- -3' miRNA: 3'- -CCUAGUaGCGGUGg------ACGACa---AGCGag -5' |
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15701 | 5' | -53.8 | NC_004065.1 | + | 78856 | 0.65 | 0.987654 |
Target: 5'- gGGGUgGUCGaccucuuuucugcCCGCCgucGCUGUugccacugUCGCUCc -3' miRNA: 3'- -CCUAgUAGC-------------GGUGGa--CGACA--------AGCGAG- -5' |
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15701 | 5' | -53.8 | NC_004065.1 | + | 88929 | 0.7 | 0.903376 |
Target: 5'- cGGA-CGUCGuCCGCUcgcgggUGCUGgcggCGCUCg -3' miRNA: 3'- -CCUaGUAGC-GGUGG------ACGACaa--GCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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