miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15701 5' -53.8 NC_004065.1 + 176238 0.66 0.982694
Target:  5'- cGGA-CcgCGCagACCUGCUGg--GCUCg -3'
miRNA:   3'- -CCUaGuaGCGg-UGGACGACaagCGAG- -5'
15701 5' -53.8 NC_004065.1 + 65886 0.68 0.961364
Target:  5'- ---aCAUCuGCCGCCUGCUGaugcCGCg- -3'
miRNA:   3'- ccuaGUAG-CGGUGGACGACaa--GCGag -5'
15701 5' -53.8 NC_004065.1 + 76778 0.68 0.961364
Target:  5'- cGGcgCAUCGCCGCCgcgacgGCgaa-CGCUa -3'
miRNA:   3'- -CCuaGUAGCGGUGGa-----CGacaaGCGAg -5'
15701 5' -53.8 NC_004065.1 + 167693 0.68 0.961364
Target:  5'- uGAUCGUCGCCGucuccgagcUCUGCUGca-GUUCu -3'
miRNA:   3'- cCUAGUAGCGGU---------GGACGACaagCGAG- -5'
15701 5' -53.8 NC_004065.1 + 110069 0.67 0.97276
Target:  5'- aGGUCGggGCUcacggccguccucuGCCUGCUGUUC-CUCu -3'
miRNA:   3'- cCUAGUagCGG--------------UGGACGACAAGcGAG- -5'
15701 5' -53.8 NC_004065.1 + 109826 0.67 0.975118
Target:  5'- --cUCGUCGCCGuCCUGCUGcggcggggggccaUCGCg- -3'
miRNA:   3'- ccuAGUAGCGGU-GGACGACa------------AGCGag -5'
15701 5' -53.8 NC_004065.1 + 54431 0.66 0.978256
Target:  5'- aGGGU--UCGCCucaGCCUcucgcucGCUGUUCGCg- -3'
miRNA:   3'- -CCUAguAGCGG---UGGA-------CGACAAGCGag -5'
15701 5' -53.8 NC_004065.1 + 111124 0.66 0.978485
Target:  5'- --uUCGUCGCCAUCUgGCUcGUgCGCgUCg -3'
miRNA:   3'- ccuAGUAGCGGUGGA-CGA-CAaGCG-AG- -5'
15701 5' -53.8 NC_004065.1 + 17703 0.66 0.980675
Target:  5'- uGGccGUCGUCGUCGCuUUGUUGUUgCGcCUCa -3'
miRNA:   3'- -CC--UAGUAGCGGUG-GACGACAA-GC-GAG- -5'
15701 5' -53.8 NC_004065.1 + 180120 0.68 0.961017
Target:  5'- aGGAUCAuacucuaUCuCCugCUGCUGUUgcUGUUCu -3'
miRNA:   3'- -CCUAGU-------AGcGGugGACGACAA--GCGAG- -5'
15701 5' -53.8 NC_004065.1 + 196820 0.68 0.957789
Target:  5'- gGGGUCGUgGUCACCUGCggcaggUGCg- -3'
miRNA:   3'- -CCUAGUAgCGGUGGACGacaa--GCGag -5'
15701 5' -53.8 NC_004065.1 + 149079 0.68 0.949976
Target:  5'- gGGGUCGUCGUCACgaucgucuuCUGCUGgggacgguaaUUCGC-Cg -3'
miRNA:   3'- -CCUAGUAGCGGUG---------GACGAC----------AAGCGaG- -5'
15701 5' -53.8 NC_004065.1 + 120358 0.75 0.650183
Target:  5'- gGGGUaCGUCGgCGCCUGaC-GUUCGCUCu -3'
miRNA:   3'- -CCUA-GUAGCgGUGGAC-GaCAAGCGAG- -5'
15701 5' -53.8 NC_004065.1 + 57760 0.74 0.710424
Target:  5'- aGAUCGUCGUCGCCgccGCcg-UCGCUCu -3'
miRNA:   3'- cCUAGUAGCGGUGGa--CGacaAGCGAG- -5'
15701 5' -53.8 NC_004065.1 + 72815 0.73 0.749393
Target:  5'- aGGAUCGguugCGCCACCUGCUGa------ -3'
miRNA:   3'- -CCUAGUa---GCGGUGGACGACaagcgag -5'
15701 5' -53.8 NC_004065.1 + 161519 0.72 0.813352
Target:  5'- gGGAgaugCGUcCGCCgccucaccugaGCCUGCUcggccGUUCGCUCa -3'
miRNA:   3'- -CCUa---GUA-GCGG-----------UGGACGA-----CAAGCGAG- -5'
15701 5' -53.8 NC_004065.1 + 105317 0.69 0.915368
Target:  5'- uGAUgcUCGCCACCU-CUGUUCcCUCg -3'
miRNA:   3'- cCUAguAGCGGUGGAcGACAAGcGAG- -5'
15701 5' -53.8 NC_004065.1 + 189850 0.69 0.931603
Target:  5'- gGGAccugcUCGUCGCCGCgaGggGUUUGCUg -3'
miRNA:   3'- -CCU-----AGUAGCGGUGgaCgaCAAGCGAg -5'
15701 5' -53.8 NC_004065.1 + 98877 0.68 0.94573
Target:  5'- gGGGUCGUCGUCGCCcacg---CGCUCg -3'
miRNA:   3'- -CCUAGUAGCGGUGGacgacaaGCGAG- -5'
15701 5' -53.8 NC_004065.1 + 97544 0.68 0.949976
Target:  5'- cGAUCAgCGCCagcGCCUGCUGcagcgggUGCUUg -3'
miRNA:   3'- cCUAGUaGCGG---UGGACGACaa-----GCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.