miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15702 3' -56.2 NC_004065.1 + 23435 0.66 0.969924
Target:  5'- cGGCGGGgCCGAccugcuCGAGaaUCGCUgguuacgagUCGCCg -3'
miRNA:   3'- -CUGCUCaGGCU------GCUC--AGCGGa--------AGCGG- -5'
15702 3' -56.2 NC_004065.1 + 211880 0.66 0.969924
Target:  5'- cACGGauucauGUCCGAUGAacacgGUCcgGCCUUCGUCc -3'
miRNA:   3'- cUGCU------CAGGCUGCU-----CAG--CGGAAGCGG- -5'
15702 3' -56.2 NC_004065.1 + 170695 0.66 0.969924
Target:  5'- aGGCGccUCCGGCG-G-CGuCCUUCGUCg -3'
miRNA:   3'- -CUGCucAGGCUGCuCaGC-GGAAGCGG- -5'
15702 3' -56.2 NC_004065.1 + 56374 0.66 0.969924
Target:  5'- gGACgGGGUCCGGCaGGGUCGgaggCGCUc -3'
miRNA:   3'- -CUG-CUCAGGCUG-CUCAGCggaaGCGG- -5'
15702 3' -56.2 NC_004065.1 + 229141 0.66 0.969924
Target:  5'- aACGccuguAGcaugCCGGCGGGgCGCCcUCGCCc -3'
miRNA:   3'- cUGC-----UCa---GGCUGCUCaGCGGaAGCGG- -5'
15702 3' -56.2 NC_004065.1 + 44853 0.66 0.969924
Target:  5'- cACGGG-CCGGagcaGcGUCGCCUcUCGCUc -3'
miRNA:   3'- cUGCUCaGGCUg---CuCAGCGGA-AGCGG- -5'
15702 3' -56.2 NC_004065.1 + 167168 0.66 0.967021
Target:  5'- aGCGAGUCguuaaauaUGGCGAcGUCGCUagCGCa -3'
miRNA:   3'- cUGCUCAG--------GCUGCU-CAGCGGaaGCGg -5'
15702 3' -56.2 NC_004065.1 + 33182 0.66 0.967021
Target:  5'- cGCGGGagCCGACcGGccCGUCUUCGUCg -3'
miRNA:   3'- cUGCUCa-GGCUGcUCa-GCGGAAGCGG- -5'
15702 3' -56.2 NC_004065.1 + 145749 0.66 0.967021
Target:  5'- uGAUGAGUgcgCCGAuCGcGUCGCg--CGCCg -3'
miRNA:   3'- -CUGCUCA---GGCU-GCuCAGCGgaaGCGG- -5'
15702 3' -56.2 NC_004065.1 + 198375 0.66 0.967021
Target:  5'- aGCGGGcCUGACGcggcgcGUCGCCgacagcgUGCCg -3'
miRNA:   3'- cUGCUCaGGCUGCu-----CAGCGGaa-----GCGG- -5'
15702 3' -56.2 NC_004065.1 + 201016 0.66 0.967021
Target:  5'- cGACGAGagagcgaCCGACgcguGAGcCGCC-UCGUCg -3'
miRNA:   3'- -CUGCUCa------GGCUG----CUCaGCGGaAGCGG- -5'
15702 3' -56.2 NC_004065.1 + 164782 0.66 0.966417
Target:  5'- gGACGGGUUggagauugucgaGACGGG-CGCCacCGCCg -3'
miRNA:   3'- -CUGCUCAGg-----------CUGCUCaGCGGaaGCGG- -5'
15702 3' -56.2 NC_004065.1 + 121829 0.66 0.963924
Target:  5'- aGAcCGGGaUCCGGCuGAGUCcGCaggCGCCc -3'
miRNA:   3'- -CU-GCUC-AGGCUG-CUCAG-CGgaaGCGG- -5'
15702 3' -56.2 NC_004065.1 + 201665 0.66 0.963924
Target:  5'- cGACGAGUCCGAgCGuGUa-CCagCGCg -3'
miRNA:   3'- -CUGCUCAGGCU-GCuCAgcGGaaGCGg -5'
15702 3' -56.2 NC_004065.1 + 118692 0.66 0.96063
Target:  5'- -cCGAGgaaGACGAGgacgcCGCCgugUUCGCCg -3'
miRNA:   3'- cuGCUCaggCUGCUCa----GCGG---AAGCGG- -5'
15702 3' -56.2 NC_004065.1 + 113182 0.66 0.96063
Target:  5'- aACGGGUUCG-CGAGcgUGCCg-CGCCc -3'
miRNA:   3'- cUGCUCAGGCuGCUCa-GCGGaaGCGG- -5'
15702 3' -56.2 NC_004065.1 + 139897 0.66 0.96063
Target:  5'- cGACGAGUCCuuCcccGUCGUCgacaCGCCa -3'
miRNA:   3'- -CUGCUCAGGcuGcu-CAGCGGaa--GCGG- -5'
15702 3' -56.2 NC_004065.1 + 99982 0.66 0.96063
Target:  5'- -uCGGG-CCG-CGGGUCGUcguCUUCGUCg -3'
miRNA:   3'- cuGCUCaGGCuGCUCAGCG---GAAGCGG- -5'
15702 3' -56.2 NC_004065.1 + 194217 0.66 0.96063
Target:  5'- aGACGGGgaUCCcuuuggcggGAUGGGUCagcuGCCUcuUCGCCu -3'
miRNA:   3'- -CUGCUC--AGG---------CUGCUCAG----CGGA--AGCGG- -5'
15702 3' -56.2 NC_004065.1 + 67692 0.66 0.96063
Target:  5'- cGACaGGUCCGucguguGCGGGUCGaacaCguaggUCGCCc -3'
miRNA:   3'- -CUGcUCAGGC------UGCUCAGCg---Ga----AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.