miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15702 5' -57.4 NC_004065.1 + 113123 0.66 0.925747
Target:  5'- -uGGCCCUGAGuCUGC-CGgaCGAGCUGc -3'
miRNA:   3'- ucCUGGGGCUC-GACGuGCa-GCUUGAU- -5'
15702 5' -57.4 NC_004065.1 + 29394 0.66 0.925747
Target:  5'- cAGGGCUC--GGCUGCcCGUCGcGCUGg -3'
miRNA:   3'- -UCCUGGGgcUCGACGuGCAGCuUGAU- -5'
15702 5' -57.4 NC_004065.1 + 225784 0.66 0.925747
Target:  5'- gAGGGCCagcAGCUGCGCGUgCGGAa-- -3'
miRNA:   3'- -UCCUGGggcUCGACGUGCA-GCUUgau -5'
15702 5' -57.4 NC_004065.1 + 150004 0.66 0.920419
Target:  5'- -aGACgCgCGAGCUGCGCGaCGcGCUGg -3'
miRNA:   3'- ucCUGgG-GCUCGACGUGCaGCuUGAU- -5'
15702 5' -57.4 NC_004065.1 + 27719 0.66 0.914866
Target:  5'- cAGGAaCCCGAGCUcGCGCGU-GAuGCg- -3'
miRNA:   3'- -UCCUgGGGCUCGA-CGUGCAgCU-UGau -5'
15702 5' -57.4 NC_004065.1 + 134248 0.66 0.914866
Target:  5'- uGGaACCcgucaCCGAGCcGCACGUCGAc--- -3'
miRNA:   3'- uCC-UGG-----GGCUCGaCGUGCAGCUugau -5'
15702 5' -57.4 NC_004065.1 + 37819 0.66 0.914866
Target:  5'- uGGugCCgucgGAGCUGCGCGcUCGcuACUAc -3'
miRNA:   3'- uCCugGGg---CUCGACGUGC-AGCu-UGAU- -5'
15702 5' -57.4 NC_004065.1 + 33522 0.66 0.914866
Target:  5'- gGGGAUaCCGAGUUGCugGcagaugcgcUCGGGCa- -3'
miRNA:   3'- -UCCUGgGGCUCGACGugC---------AGCUUGau -5'
15702 5' -57.4 NC_004065.1 + 122744 0.66 0.914866
Target:  5'- cGGcGACCgCCcAGCUGCGgGUCGugcGCUAc -3'
miRNA:   3'- -UC-CUGG-GGcUCGACGUgCAGCu--UGAU- -5'
15702 5' -57.4 NC_004065.1 + 229808 0.66 0.909089
Target:  5'- gGGGACCCUGGGCgucauuuuaUACG-CGAACg- -3'
miRNA:   3'- -UCCUGGGGCUCGac-------GUGCaGCUUGau -5'
15702 5' -57.4 NC_004065.1 + 114170 0.66 0.909089
Target:  5'- cGGGACUCUGAGgaGCGCGcCGccGGCc- -3'
miRNA:   3'- -UCCUGGGGCUCgaCGUGCaGC--UUGau -5'
15702 5' -57.4 NC_004065.1 + 22064 0.66 0.90309
Target:  5'- gAGGAUUCaaGAGgUGCACGUCGAccACg- -3'
miRNA:   3'- -UCCUGGGg-CUCgACGUGCAGCU--UGau -5'
15702 5' -57.4 NC_004065.1 + 47123 0.66 0.90309
Target:  5'- -aGACCUaCGAGCUGC-CGUCGGuCUc -3'
miRNA:   3'- ucCUGGG-GCUCGACGuGCAGCUuGAu -5'
15702 5' -57.4 NC_004065.1 + 38320 0.66 0.90309
Target:  5'- cGGGCCuguuguCCG-GCgGCACGUUGGACg- -3'
miRNA:   3'- uCCUGG------GGCuCGaCGUGCAGCUUGau -5'
15702 5' -57.4 NC_004065.1 + 201232 0.66 0.896871
Target:  5'- gAGGACCCgCGAGCUGUucuccucCGUCa----- -3'
miRNA:   3'- -UCCUGGG-GCUCGACGu------GCAGcuugau -5'
15702 5' -57.4 NC_004065.1 + 64878 0.67 0.890434
Target:  5'- cGGACCgCG-GC-GCGCGUCGGAg-- -3'
miRNA:   3'- uCCUGGgGCuCGaCGUGCAGCUUgau -5'
15702 5' -57.4 NC_004065.1 + 33034 0.67 0.890434
Target:  5'- gAGGcCCUCGAGC-GCAUGuuccUCGAGCa- -3'
miRNA:   3'- -UCCuGGGGCUCGaCGUGC----AGCUUGau -5'
15702 5' -57.4 NC_004065.1 + 133821 0.67 0.890434
Target:  5'- aGGcGACCCCGAGCaacauCACGUCGccCUc -3'
miRNA:   3'- -UC-CUGGGGCUCGac---GUGCAGCuuGAu -5'
15702 5' -57.4 NC_004065.1 + 97928 0.67 0.883784
Target:  5'- cAGGACCcgcaguuccuCCGgcGGCaGCGCGUCGAAgUGc -3'
miRNA:   3'- -UCCUGG----------GGC--UCGaCGUGCAGCUUgAU- -5'
15702 5' -57.4 NC_004065.1 + 222418 0.67 0.883784
Target:  5'- gAGGGCCgcaaCGAacGCUucgucGCGCGUCGGACg- -3'
miRNA:   3'- -UCCUGGg---GCU--CGA-----CGUGCAGCUUGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.