#
miRNA: 3'- -UCCUGGG-GCUCGACGu------GCAGcuugau -5'
miRNA: 3'- ucCUGGG-GCUCGACGuGCAGCUuGAu -5'
miRNA: 3'- uCC-UGG-----GGCUCGaCGUGCAGCUugau -5'
miRNA: 3'- uCCugGGg---CUCGACGUGC-AGCu-UGAU- -5'
miRNA: 3'- -UCCUGGGgcUCGACGuGCAGCuUGAU- -5'
Results 41 - 45 of 45 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio#
|
P value |
| Predicted miRNA align pattern | |||||||
| 15702 | 5' | -57.4 | NC_004065.1 | + | 201232 | 0.66 | 0.896871 |
|
Target: 5'- gAGGACCCgCGAGCUGUucuccucCGUCa----- -3' miRNA: 3'- -UCCUGGG-GCUCGACGu------GCAGcuugau -5' |
|||||||
| 15702 | 5' | -57.4 | NC_004065.1 | + | 47123 | 0.66 | 0.90309 |
|
Target: 5'- -aGACCUaCGAGCUGC-CGUCGGuCUc -3' miRNA: 3'- ucCUGGG-GCUCGACGuGCAGCUuGAu -5' |
|||||||
| 15702 | 5' | -57.4 | NC_004065.1 | + | 134248 | 0.66 | 0.914866 |
|
Target: 5'- uGGaACCcgucaCCGAGCcGCACGUCGAc--- -3' miRNA: 3'- uCC-UGG-----GGCUCGaCGUGCAGCUugau -5' |
|||||||
| 15702 | 5' | -57.4 | NC_004065.1 | + | 37819 | 0.66 | 0.914866 |
|
Target: 5'- uGGugCCgucgGAGCUGCGCGcUCGcuACUAc -3' miRNA: 3'- uCCugGGg---CUCGACGUGC-AGCu-UGAU- -5' |
|||||||
| 15702 | 5' | -57.4 | NC_004065.1 | + | 29394 | 0.66 | 0.925747 |
|
Target: 5'- cAGGGCUC--GGCUGCcCGUCGcGCUGg -3' miRNA: 3'- -UCCUGGGgcUCGACGuGCAGCuUGAU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home