miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15702 5' -57.4 NC_004065.1 + 45345 1.06 0.004667
Target:  5'- gAGGACCCCGAGCUGCACGUCGAACUAc -3'
miRNA:   3'- -UCCUGGGGCUCGACGUGCAGCUUGAU- -5'
15702 5' -57.4 NC_004065.1 + 67019 0.79 0.27112
Target:  5'- cGGGCCCCGcGCgggcagccagUGCAUGUCGAACUGc -3'
miRNA:   3'- uCCUGGGGCuCG----------ACGUGCAGCUUGAU- -5'
15702 5' -57.4 NC_004065.1 + 124878 0.75 0.436128
Target:  5'- gAGGugCCCGGGUUGCGCuccUCGAugUGc -3'
miRNA:   3'- -UCCugGGGCUCGACGUGc--AGCUugAU- -5'
15702 5' -57.4 NC_004065.1 + 126218 0.74 0.508908
Target:  5'- cAGGACCCgcugGAGCgGgACGUCGAGCUc -3'
miRNA:   3'- -UCCUGGGg---CUCGaCgUGCAGCUUGAu -5'
15702 5' -57.4 NC_004065.1 + 225928 0.73 0.556897
Target:  5'- -cGACCCCaaacGGCUGCGCGUgGAGCg- -3'
miRNA:   3'- ucCUGGGGc---UCGACGUGCAgCUUGau -5'
15702 5' -57.4 NC_004065.1 + 83877 0.71 0.645819
Target:  5'- aAGGugCUCGAGCUGUAC-UCGAAg-- -3'
miRNA:   3'- -UCCugGGGCUCGACGUGcAGCUUgau -5'
15702 5' -57.4 NC_004065.1 + 88875 0.71 0.675528
Target:  5'- uGGAUCCCGAGCUgGCGgccauCGcCGAGCUc -3'
miRNA:   3'- uCCUGGGGCUCGA-CGU-----GCaGCUUGAu -5'
15702 5' -57.4 NC_004065.1 + 100452 0.7 0.724264
Target:  5'- uGGACCUCaAGCUGCGCGagGAcCUGc -3'
miRNA:   3'- uCCUGGGGcUCGACGUGCagCUuGAU- -5'
15702 5' -57.4 NC_004065.1 + 191527 0.7 0.73382
Target:  5'- gAGGGCCCCGAagUGCACuUCGAgacgagGCUGg -3'
miRNA:   3'- -UCCUGGGGCUcgACGUGcAGCU------UGAU- -5'
15702 5' -57.4 NC_004065.1 + 92031 0.69 0.780186
Target:  5'- gAGGACCgCGGGCUcuugGCGCGcUCGAGg-- -3'
miRNA:   3'- -UCCUGGgGCUCGA----CGUGC-AGCUUgau -5'
15702 5' -57.4 NC_004065.1 + 48261 0.69 0.789117
Target:  5'- aGGGACCCCGAcagcuccuuCUGCAUGUCGcgGAUg- -3'
miRNA:   3'- -UCCUGGGGCUc--------GACGUGCAGC--UUGau -5'
15702 5' -57.4 NC_004065.1 + 64452 0.68 0.806571
Target:  5'- gAGGaACUgucgcgccguggCCGAGCUGCugGagGAGCUGc -3'
miRNA:   3'- -UCC-UGG------------GGCUCGACGugCagCUUGAU- -5'
15702 5' -57.4 NC_004065.1 + 92342 0.68 0.806571
Target:  5'- cGGGCUCgGAGCUGCugG-CGcAACg- -3'
miRNA:   3'- uCCUGGGgCUCGACGugCaGC-UUGau -5'
15702 5' -57.4 NC_004065.1 + 225834 0.68 0.806571
Target:  5'- cGGGCCUCGAGCUcgucGCGgGUCGGu--- -3'
miRNA:   3'- uCCUGGGGCUCGA----CGUgCAGCUugau -5'
15702 5' -57.4 NC_004065.1 + 23964 0.68 0.831617
Target:  5'- cGGACCgCGA-CUGCuuGUCGGGCg- -3'
miRNA:   3'- uCCUGGgGCUcGACGugCAGCUUGau -5'
15702 5' -57.4 NC_004065.1 + 34718 0.68 0.831617
Target:  5'- -aGACCUCGAGCUucucguuacacaGCACGaUGAACUGc -3'
miRNA:   3'- ucCUGGGGCUCGA------------CGUGCaGCUUGAU- -5'
15702 5' -57.4 NC_004065.1 + 103012 0.68 0.839633
Target:  5'- uAGG--UCCGAGCgcgGCACGUCGAAa-- -3'
miRNA:   3'- -UCCugGGGCUCGa--CGUGCAGCUUgau -5'
15702 5' -57.4 NC_004065.1 + 76288 0.68 0.847471
Target:  5'- cGGuGAUCCUGAGCUcGUucuCGUCGAGCc- -3'
miRNA:   3'- -UC-CUGGGGCUCGA-CGu--GCAGCUUGau -5'
15702 5' -57.4 NC_004065.1 + 81624 0.67 0.862589
Target:  5'- cAGGACgCCGuGCUcGUGCG-CGAACUc -3'
miRNA:   3'- -UCCUGgGGCuCGA-CGUGCaGCUUGAu -5'
15702 5' -57.4 NC_004065.1 + 142488 0.67 0.862589
Target:  5'- cGGcuaACCCCGucuggcacgcGCUGCGCGUCGAc--- -3'
miRNA:   3'- uCC---UGGGGCu---------CGACGUGCAGCUugau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.