Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15702 | 5' | -57.4 | NC_004065.1 | + | 113123 | 0.66 | 0.925747 |
Target: 5'- -uGGCCCUGAGuCUGC-CGgaCGAGCUGc -3' miRNA: 3'- ucCUGGGGCUC-GACGuGCa-GCUUGAU- -5' |
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15702 | 5' | -57.4 | NC_004065.1 | + | 29394 | 0.66 | 0.925747 |
Target: 5'- cAGGGCUC--GGCUGCcCGUCGcGCUGg -3' miRNA: 3'- -UCCUGGGgcUCGACGuGCAGCuUGAU- -5' |
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15702 | 5' | -57.4 | NC_004065.1 | + | 225784 | 0.66 | 0.925747 |
Target: 5'- gAGGGCCagcAGCUGCGCGUgCGGAa-- -3' miRNA: 3'- -UCCUGGggcUCGACGUGCA-GCUUgau -5' |
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15702 | 5' | -57.4 | NC_004065.1 | + | 150004 | 0.66 | 0.920419 |
Target: 5'- -aGACgCgCGAGCUGCGCGaCGcGCUGg -3' miRNA: 3'- ucCUGgG-GCUCGACGUGCaGCuUGAU- -5' |
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15702 | 5' | -57.4 | NC_004065.1 | + | 27719 | 0.66 | 0.914866 |
Target: 5'- cAGGAaCCCGAGCUcGCGCGU-GAuGCg- -3' miRNA: 3'- -UCCUgGGGCUCGA-CGUGCAgCU-UGau -5' |
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15702 | 5' | -57.4 | NC_004065.1 | + | 134248 | 0.66 | 0.914866 |
Target: 5'- uGGaACCcgucaCCGAGCcGCACGUCGAc--- -3' miRNA: 3'- uCC-UGG-----GGCUCGaCGUGCAGCUugau -5' |
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15702 | 5' | -57.4 | NC_004065.1 | + | 37819 | 0.66 | 0.914866 |
Target: 5'- uGGugCCgucgGAGCUGCGCGcUCGcuACUAc -3' miRNA: 3'- uCCugGGg---CUCGACGUGC-AGCu-UGAU- -5' |
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15702 | 5' | -57.4 | NC_004065.1 | + | 33522 | 0.66 | 0.914866 |
Target: 5'- gGGGAUaCCGAGUUGCugGcagaugcgcUCGGGCa- -3' miRNA: 3'- -UCCUGgGGCUCGACGugC---------AGCUUGau -5' |
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15702 | 5' | -57.4 | NC_004065.1 | + | 122744 | 0.66 | 0.914866 |
Target: 5'- cGGcGACCgCCcAGCUGCGgGUCGugcGCUAc -3' miRNA: 3'- -UC-CUGG-GGcUCGACGUgCAGCu--UGAU- -5' |
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15702 | 5' | -57.4 | NC_004065.1 | + | 229808 | 0.66 | 0.909089 |
Target: 5'- gGGGACCCUGGGCgucauuuuaUACG-CGAACg- -3' miRNA: 3'- -UCCUGGGGCUCGac-------GUGCaGCUUGau -5' |
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15702 | 5' | -57.4 | NC_004065.1 | + | 114170 | 0.66 | 0.909089 |
Target: 5'- cGGGACUCUGAGgaGCGCGcCGccGGCc- -3' miRNA: 3'- -UCCUGGGGCUCgaCGUGCaGC--UUGau -5' |
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15702 | 5' | -57.4 | NC_004065.1 | + | 22064 | 0.66 | 0.90309 |
Target: 5'- gAGGAUUCaaGAGgUGCACGUCGAccACg- -3' miRNA: 3'- -UCCUGGGg-CUCgACGUGCAGCU--UGau -5' |
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15702 | 5' | -57.4 | NC_004065.1 | + | 47123 | 0.66 | 0.90309 |
Target: 5'- -aGACCUaCGAGCUGC-CGUCGGuCUc -3' miRNA: 3'- ucCUGGG-GCUCGACGuGCAGCUuGAu -5' |
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15702 | 5' | -57.4 | NC_004065.1 | + | 38320 | 0.66 | 0.90309 |
Target: 5'- cGGGCCuguuguCCG-GCgGCACGUUGGACg- -3' miRNA: 3'- uCCUGG------GGCuCGaCGUGCAGCUUGau -5' |
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15702 | 5' | -57.4 | NC_004065.1 | + | 201232 | 0.66 | 0.896871 |
Target: 5'- gAGGACCCgCGAGCUGUucuccucCGUCa----- -3' miRNA: 3'- -UCCUGGG-GCUCGACGu------GCAGcuugau -5' |
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15702 | 5' | -57.4 | NC_004065.1 | + | 64878 | 0.67 | 0.890434 |
Target: 5'- cGGACCgCG-GC-GCGCGUCGGAg-- -3' miRNA: 3'- uCCUGGgGCuCGaCGUGCAGCUUgau -5' |
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15702 | 5' | -57.4 | NC_004065.1 | + | 33034 | 0.67 | 0.890434 |
Target: 5'- gAGGcCCUCGAGC-GCAUGuuccUCGAGCa- -3' miRNA: 3'- -UCCuGGGGCUCGaCGUGC----AGCUUGau -5' |
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15702 | 5' | -57.4 | NC_004065.1 | + | 133821 | 0.67 | 0.890434 |
Target: 5'- aGGcGACCCCGAGCaacauCACGUCGccCUc -3' miRNA: 3'- -UC-CUGGGGCUCGac---GUGCAGCuuGAu -5' |
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15702 | 5' | -57.4 | NC_004065.1 | + | 97928 | 0.67 | 0.883784 |
Target: 5'- cAGGACCcgcaguuccuCCGgcGGCaGCGCGUCGAAgUGc -3' miRNA: 3'- -UCCUGG----------GGC--UCGaCGUGCAGCUUgAU- -5' |
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15702 | 5' | -57.4 | NC_004065.1 | + | 222418 | 0.67 | 0.883784 |
Target: 5'- gAGGGCCgcaaCGAacGCUucgucGCGCGUCGGACg- -3' miRNA: 3'- -UCCUGGg---GCU--CGA-----CGUGCAGCUUGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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