Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15702 | 5' | -57.4 | NC_004065.1 | + | 97928 | 0.67 | 0.883784 |
Target: 5'- cAGGACCcgcaguuccuCCGgcGGCaGCGCGUCGAAgUGc -3' miRNA: 3'- -UCCUGG----------GGC--UCGaCGUGCAGCUUgAU- -5' |
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15702 | 5' | -57.4 | NC_004065.1 | + | 182684 | 0.67 | 0.876923 |
Target: 5'- cAGGACCCCcGGCUGCccaGCGcccccUCGAGg-- -3' miRNA: 3'- -UCCUGGGGcUCGACG---UGC-----AGCUUgau -5' |
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15702 | 5' | -57.4 | NC_004065.1 | + | 31701 | 0.67 | 0.876923 |
Target: 5'- cGGugCCCGAGCgUGCcgaugACGgUGAGCUc -3' miRNA: 3'- uCCugGGGCUCG-ACG-----UGCaGCUUGAu -5' |
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15702 | 5' | -57.4 | NC_004065.1 | + | 68251 | 0.67 | 0.869857 |
Target: 5'- gAGGACggaCCG-GCUGCugGCGUCGAAg-- -3' miRNA: 3'- -UCCUGg--GGCuCGACG--UGCAGCUUgau -5' |
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15702 | 5' | -57.4 | NC_004065.1 | + | 150663 | 0.67 | 0.869857 |
Target: 5'- cGGACCC---GCUGCGCGcgCGGACg- -3' miRNA: 3'- uCCUGGGgcuCGACGUGCa-GCUUGau -5' |
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15702 | 5' | -57.4 | NC_004065.1 | + | 142488 | 0.67 | 0.862589 |
Target: 5'- cGGcuaACCCCGucuggcacgcGCUGCGCGUCGAc--- -3' miRNA: 3'- uCC---UGGGGCu---------CGACGUGCAGCUugau -5' |
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15702 | 5' | -57.4 | NC_004065.1 | + | 81624 | 0.67 | 0.862589 |
Target: 5'- cAGGACgCCGuGCUcGUGCG-CGAACUc -3' miRNA: 3'- -UCCUGgGGCuCGA-CGUGCaGCUUGAu -5' |
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15702 | 5' | -57.4 | NC_004065.1 | + | 76288 | 0.68 | 0.847471 |
Target: 5'- cGGuGAUCCUGAGCUcGUucuCGUCGAGCc- -3' miRNA: 3'- -UC-CUGGGGCUCGA-CGu--GCAGCUUGau -5' |
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15702 | 5' | -57.4 | NC_004065.1 | + | 103012 | 0.68 | 0.839633 |
Target: 5'- uAGG--UCCGAGCgcgGCACGUCGAAa-- -3' miRNA: 3'- -UCCugGGGCUCGa--CGUGCAGCUUgau -5' |
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15702 | 5' | -57.4 | NC_004065.1 | + | 34718 | 0.68 | 0.831617 |
Target: 5'- -aGACCUCGAGCUucucguuacacaGCACGaUGAACUGc -3' miRNA: 3'- ucCUGGGGCUCGA------------CGUGCaGCUUGAU- -5' |
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15702 | 5' | -57.4 | NC_004065.1 | + | 23964 | 0.68 | 0.831617 |
Target: 5'- cGGACCgCGA-CUGCuuGUCGGGCg- -3' miRNA: 3'- uCCUGGgGCUcGACGugCAGCUUGau -5' |
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15702 | 5' | -57.4 | NC_004065.1 | + | 64452 | 0.68 | 0.806571 |
Target: 5'- gAGGaACUgucgcgccguggCCGAGCUGCugGagGAGCUGc -3' miRNA: 3'- -UCC-UGG------------GGCUCGACGugCagCUUGAU- -5' |
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15702 | 5' | -57.4 | NC_004065.1 | + | 92342 | 0.68 | 0.806571 |
Target: 5'- cGGGCUCgGAGCUGCugG-CGcAACg- -3' miRNA: 3'- uCCUGGGgCUCGACGugCaGC-UUGau -5' |
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15702 | 5' | -57.4 | NC_004065.1 | + | 225834 | 0.68 | 0.806571 |
Target: 5'- cGGGCCUCGAGCUcgucGCGgGUCGGu--- -3' miRNA: 3'- uCCUGGGGCUCGA----CGUgCAGCUugau -5' |
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15702 | 5' | -57.4 | NC_004065.1 | + | 48261 | 0.69 | 0.789117 |
Target: 5'- aGGGACCCCGAcagcuccuuCUGCAUGUCGcgGAUg- -3' miRNA: 3'- -UCCUGGGGCUc--------GACGUGCAGC--UUGau -5' |
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15702 | 5' | -57.4 | NC_004065.1 | + | 92031 | 0.69 | 0.780186 |
Target: 5'- gAGGACCgCGGGCUcuugGCGCGcUCGAGg-- -3' miRNA: 3'- -UCCUGGgGCUCGA----CGUGC-AGCUUgau -5' |
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15702 | 5' | -57.4 | NC_004065.1 | + | 191527 | 0.7 | 0.73382 |
Target: 5'- gAGGGCCCCGAagUGCACuUCGAgacgagGCUGg -3' miRNA: 3'- -UCCUGGGGCUcgACGUGcAGCU------UGAU- -5' |
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15702 | 5' | -57.4 | NC_004065.1 | + | 100452 | 0.7 | 0.724264 |
Target: 5'- uGGACCUCaAGCUGCGCGagGAcCUGc -3' miRNA: 3'- uCCUGGGGcUCGACGUGCagCUuGAU- -5' |
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15702 | 5' | -57.4 | NC_004065.1 | + | 88875 | 0.71 | 0.675528 |
Target: 5'- uGGAUCCCGAGCUgGCGgccauCGcCGAGCUc -3' miRNA: 3'- uCCUGGGGCUCGA-CGU-----GCaGCUUGAu -5' |
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15702 | 5' | -57.4 | NC_004065.1 | + | 83877 | 0.71 | 0.645819 |
Target: 5'- aAGGugCUCGAGCUGUAC-UCGAAg-- -3' miRNA: 3'- -UCCugGGGCUCGACGUGcAGCUUgau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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