miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15702 5' -57.4 NC_004065.1 + 22064 0.66 0.90309
Target:  5'- gAGGAUUCaaGAGgUGCACGUCGAccACg- -3'
miRNA:   3'- -UCCUGGGg-CUCgACGUGCAGCU--UGau -5'
15702 5' -57.4 NC_004065.1 + 23964 0.68 0.831617
Target:  5'- cGGACCgCGA-CUGCuuGUCGGGCg- -3'
miRNA:   3'- uCCUGGgGCUcGACGugCAGCUUGau -5'
15702 5' -57.4 NC_004065.1 + 27719 0.66 0.914866
Target:  5'- cAGGAaCCCGAGCUcGCGCGU-GAuGCg- -3'
miRNA:   3'- -UCCUgGGGCUCGA-CGUGCAgCU-UGau -5'
15702 5' -57.4 NC_004065.1 + 29394 0.66 0.925747
Target:  5'- cAGGGCUC--GGCUGCcCGUCGcGCUGg -3'
miRNA:   3'- -UCCUGGGgcUCGACGuGCAGCuUGAU- -5'
15702 5' -57.4 NC_004065.1 + 31701 0.67 0.876923
Target:  5'- cGGugCCCGAGCgUGCcgaugACGgUGAGCUc -3'
miRNA:   3'- uCCugGGGCUCG-ACG-----UGCaGCUUGAu -5'
15702 5' -57.4 NC_004065.1 + 33034 0.67 0.890434
Target:  5'- gAGGcCCUCGAGC-GCAUGuuccUCGAGCa- -3'
miRNA:   3'- -UCCuGGGGCUCGaCGUGC----AGCUUGau -5'
15702 5' -57.4 NC_004065.1 + 33522 0.66 0.914866
Target:  5'- gGGGAUaCCGAGUUGCugGcagaugcgcUCGGGCa- -3'
miRNA:   3'- -UCCUGgGGCUCGACGugC---------AGCUUGau -5'
15702 5' -57.4 NC_004065.1 + 34718 0.68 0.831617
Target:  5'- -aGACCUCGAGCUucucguuacacaGCACGaUGAACUGc -3'
miRNA:   3'- ucCUGGGGCUCGA------------CGUGCaGCUUGAU- -5'
15702 5' -57.4 NC_004065.1 + 37819 0.66 0.914866
Target:  5'- uGGugCCgucgGAGCUGCGCGcUCGcuACUAc -3'
miRNA:   3'- uCCugGGg---CUCGACGUGC-AGCu-UGAU- -5'
15702 5' -57.4 NC_004065.1 + 38320 0.66 0.90309
Target:  5'- cGGGCCuguuguCCG-GCgGCACGUUGGACg- -3'
miRNA:   3'- uCCUGG------GGCuCGaCGUGCAGCUUGau -5'
15702 5' -57.4 NC_004065.1 + 45345 1.06 0.004667
Target:  5'- gAGGACCCCGAGCUGCACGUCGAACUAc -3'
miRNA:   3'- -UCCUGGGGCUCGACGUGCAGCUUGAU- -5'
15702 5' -57.4 NC_004065.1 + 47123 0.66 0.90309
Target:  5'- -aGACCUaCGAGCUGC-CGUCGGuCUc -3'
miRNA:   3'- ucCUGGG-GCUCGACGuGCAGCUuGAu -5'
15702 5' -57.4 NC_004065.1 + 48261 0.69 0.789117
Target:  5'- aGGGACCCCGAcagcuccuuCUGCAUGUCGcgGAUg- -3'
miRNA:   3'- -UCCUGGGGCUc--------GACGUGCAGC--UUGau -5'
15702 5' -57.4 NC_004065.1 + 64452 0.68 0.806571
Target:  5'- gAGGaACUgucgcgccguggCCGAGCUGCugGagGAGCUGc -3'
miRNA:   3'- -UCC-UGG------------GGCUCGACGugCagCUUGAU- -5'
15702 5' -57.4 NC_004065.1 + 64878 0.67 0.890434
Target:  5'- cGGACCgCG-GC-GCGCGUCGGAg-- -3'
miRNA:   3'- uCCUGGgGCuCGaCGUGCAGCUUgau -5'
15702 5' -57.4 NC_004065.1 + 67019 0.79 0.27112
Target:  5'- cGGGCCCCGcGCgggcagccagUGCAUGUCGAACUGc -3'
miRNA:   3'- uCCUGGGGCuCG----------ACGUGCAGCUUGAU- -5'
15702 5' -57.4 NC_004065.1 + 68251 0.67 0.869857
Target:  5'- gAGGACggaCCG-GCUGCugGCGUCGAAg-- -3'
miRNA:   3'- -UCCUGg--GGCuCGACG--UGCAGCUUgau -5'
15702 5' -57.4 NC_004065.1 + 76288 0.68 0.847471
Target:  5'- cGGuGAUCCUGAGCUcGUucuCGUCGAGCc- -3'
miRNA:   3'- -UC-CUGGGGCUCGA-CGu--GCAGCUUGau -5'
15702 5' -57.4 NC_004065.1 + 81624 0.67 0.862589
Target:  5'- cAGGACgCCGuGCUcGUGCG-CGAACUc -3'
miRNA:   3'- -UCCUGgGGCuCGA-CGUGCaGCUUGAu -5'
15702 5' -57.4 NC_004065.1 + 83877 0.71 0.645819
Target:  5'- aAGGugCUCGAGCUGUAC-UCGAAg-- -3'
miRNA:   3'- -UCCugGGGCUCGACGUGcAGCUUgau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.