miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15702 5' -57.4 NC_004065.1 + 229808 0.66 0.909089
Target:  5'- gGGGACCCUGGGCgucauuuuaUACG-CGAACg- -3'
miRNA:   3'- -UCCUGGGGCUCGac-------GUGCaGCUUGau -5'
15702 5' -57.4 NC_004065.1 + 225928 0.73 0.556897
Target:  5'- -cGACCCCaaacGGCUGCGCGUgGAGCg- -3'
miRNA:   3'- ucCUGGGGc---UCGACGUGCAgCUUGau -5'
15702 5' -57.4 NC_004065.1 + 225834 0.68 0.806571
Target:  5'- cGGGCCUCGAGCUcgucGCGgGUCGGu--- -3'
miRNA:   3'- uCCUGGGGCUCGA----CGUgCAGCUugau -5'
15702 5' -57.4 NC_004065.1 + 225784 0.66 0.925747
Target:  5'- gAGGGCCagcAGCUGCGCGUgCGGAa-- -3'
miRNA:   3'- -UCCUGGggcUCGACGUGCA-GCUUgau -5'
15702 5' -57.4 NC_004065.1 + 222418 0.67 0.883784
Target:  5'- gAGGGCCgcaaCGAacGCUucgucGCGCGUCGGACg- -3'
miRNA:   3'- -UCCUGGg---GCU--CGA-----CGUGCAGCUUGau -5'
15702 5' -57.4 NC_004065.1 + 201232 0.66 0.896871
Target:  5'- gAGGACCCgCGAGCUGUucuccucCGUCa----- -3'
miRNA:   3'- -UCCUGGG-GCUCGACGu------GCAGcuugau -5'
15702 5' -57.4 NC_004065.1 + 191527 0.7 0.73382
Target:  5'- gAGGGCCCCGAagUGCACuUCGAgacgagGCUGg -3'
miRNA:   3'- -UCCUGGGGCUcgACGUGcAGCU------UGAU- -5'
15702 5' -57.4 NC_004065.1 + 182684 0.67 0.876923
Target:  5'- cAGGACCCCcGGCUGCccaGCGcccccUCGAGg-- -3'
miRNA:   3'- -UCCUGGGGcUCGACG---UGC-----AGCUUgau -5'
15702 5' -57.4 NC_004065.1 + 150663 0.67 0.869857
Target:  5'- cGGACCC---GCUGCGCGcgCGGACg- -3'
miRNA:   3'- uCCUGGGgcuCGACGUGCa-GCUUGau -5'
15702 5' -57.4 NC_004065.1 + 150004 0.66 0.920419
Target:  5'- -aGACgCgCGAGCUGCGCGaCGcGCUGg -3'
miRNA:   3'- ucCUGgG-GCUCGACGUGCaGCuUGAU- -5'
15702 5' -57.4 NC_004065.1 + 142488 0.67 0.862589
Target:  5'- cGGcuaACCCCGucuggcacgcGCUGCGCGUCGAc--- -3'
miRNA:   3'- uCC---UGGGGCu---------CGACGUGCAGCUugau -5'
15702 5' -57.4 NC_004065.1 + 134248 0.66 0.914866
Target:  5'- uGGaACCcgucaCCGAGCcGCACGUCGAc--- -3'
miRNA:   3'- uCC-UGG-----GGCUCGaCGUGCAGCUugau -5'
15702 5' -57.4 NC_004065.1 + 133821 0.67 0.890434
Target:  5'- aGGcGACCCCGAGCaacauCACGUCGccCUc -3'
miRNA:   3'- -UC-CUGGGGCUCGac---GUGCAGCuuGAu -5'
15702 5' -57.4 NC_004065.1 + 126218 0.74 0.508908
Target:  5'- cAGGACCCgcugGAGCgGgACGUCGAGCUc -3'
miRNA:   3'- -UCCUGGGg---CUCGaCgUGCAGCUUGAu -5'
15702 5' -57.4 NC_004065.1 + 125060 0.67 0.883784
Target:  5'- uGGACgCCCG-GC-GgACGUCGGACg- -3'
miRNA:   3'- uCCUG-GGGCuCGaCgUGCAGCUUGau -5'
15702 5' -57.4 NC_004065.1 + 124878 0.75 0.436128
Target:  5'- gAGGugCCCGGGUUGCGCuccUCGAugUGc -3'
miRNA:   3'- -UCCugGGGCUCGACGUGc--AGCUugAU- -5'
15702 5' -57.4 NC_004065.1 + 122744 0.66 0.914866
Target:  5'- cGGcGACCgCCcAGCUGCGgGUCGugcGCUAc -3'
miRNA:   3'- -UC-CUGG-GGcUCGACGUgCAGCu--UGAU- -5'
15702 5' -57.4 NC_004065.1 + 114170 0.66 0.909089
Target:  5'- cGGGACUCUGAGgaGCGCGcCGccGGCc- -3'
miRNA:   3'- -UCCUGGGGCUCgaCGUGCaGC--UUGau -5'
15702 5' -57.4 NC_004065.1 + 113123 0.66 0.925747
Target:  5'- -uGGCCCUGAGuCUGC-CGgaCGAGCUGc -3'
miRNA:   3'- ucCUGGGGCUC-GACGuGCa-GCUUGAU- -5'
15702 5' -57.4 NC_004065.1 + 103012 0.68 0.839633
Target:  5'- uAGG--UCCGAGCgcgGCACGUCGAAa-- -3'
miRNA:   3'- -UCCugGGGCUCGa--CGUGCAGCUUgau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.