Results 41 - 45 of 45 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15702 | 5' | -57.4 | NC_004065.1 | + | 31701 | 0.67 | 0.876923 |
Target: 5'- cGGugCCCGAGCgUGCcgaugACGgUGAGCUc -3' miRNA: 3'- uCCugGGGCUCG-ACG-----UGCaGCUUGAu -5' |
|||||||
15702 | 5' | -57.4 | NC_004065.1 | + | 29394 | 0.66 | 0.925747 |
Target: 5'- cAGGGCUC--GGCUGCcCGUCGcGCUGg -3' miRNA: 3'- -UCCUGGGgcUCGACGuGCAGCuUGAU- -5' |
|||||||
15702 | 5' | -57.4 | NC_004065.1 | + | 27719 | 0.66 | 0.914866 |
Target: 5'- cAGGAaCCCGAGCUcGCGCGU-GAuGCg- -3' miRNA: 3'- -UCCUgGGGCUCGA-CGUGCAgCU-UGau -5' |
|||||||
15702 | 5' | -57.4 | NC_004065.1 | + | 23964 | 0.68 | 0.831617 |
Target: 5'- cGGACCgCGA-CUGCuuGUCGGGCg- -3' miRNA: 3'- uCCUGGgGCUcGACGugCAGCUUGau -5' |
|||||||
15702 | 5' | -57.4 | NC_004065.1 | + | 22064 | 0.66 | 0.90309 |
Target: 5'- gAGGAUUCaaGAGgUGCACGUCGAccACg- -3' miRNA: 3'- -UCCUGGGg-CUCgACGUGCAGCU--UGau -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home