miRNA display CGI


Results 1 - 20 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15702 5' -57.4 NC_004065.1 + 67019 0.79 0.27112
Target:  5'- cGGGCCCCGcGCgggcagccagUGCAUGUCGAACUGc -3'
miRNA:   3'- uCCUGGGGCuCG----------ACGUGCAGCUUGAU- -5'
15702 5' -57.4 NC_004065.1 + 33522 0.66 0.914866
Target:  5'- gGGGAUaCCGAGUUGCugGcagaugcgcUCGGGCa- -3'
miRNA:   3'- -UCCUGgGGCUCGACGugC---------AGCUUGau -5'
15702 5' -57.4 NC_004065.1 + 134248 0.66 0.914866
Target:  5'- uGGaACCcgucaCCGAGCcGCACGUCGAc--- -3'
miRNA:   3'- uCC-UGG-----GGCUCGaCGUGCAGCUugau -5'
15702 5' -57.4 NC_004065.1 + 37819 0.66 0.914866
Target:  5'- uGGugCCgucgGAGCUGCGCGcUCGcuACUAc -3'
miRNA:   3'- uCCugGGg---CUCGACGUGC-AGCu-UGAU- -5'
15702 5' -57.4 NC_004065.1 + 114170 0.66 0.909089
Target:  5'- cGGGACUCUGAGgaGCGCGcCGccGGCc- -3'
miRNA:   3'- -UCCUGGGGCUCgaCGUGCaGC--UUGau -5'
15702 5' -57.4 NC_004065.1 + 47123 0.66 0.90309
Target:  5'- -aGACCUaCGAGCUGC-CGUCGGuCUc -3'
miRNA:   3'- ucCUGGG-GCUCGACGuGCAGCUuGAu -5'
15702 5' -57.4 NC_004065.1 + 201232 0.66 0.896871
Target:  5'- gAGGACCCgCGAGCUGUucuccucCGUCa----- -3'
miRNA:   3'- -UCCUGGG-GCUCGACGu------GCAGcuugau -5'
15702 5' -57.4 NC_004065.1 + 64878 0.67 0.890434
Target:  5'- cGGACCgCG-GC-GCGCGUCGGAg-- -3'
miRNA:   3'- uCCUGGgGCuCGaCGUGCAGCUUgau -5'
15702 5' -57.4 NC_004065.1 + 97928 0.67 0.883784
Target:  5'- cAGGACCcgcaguuccuCCGgcGGCaGCGCGUCGAAgUGc -3'
miRNA:   3'- -UCCUGG----------GGC--UCGaCGUGCAGCUUgAU- -5'
15702 5' -57.4 NC_004065.1 + 31701 0.67 0.876923
Target:  5'- cGGugCCCGAGCgUGCcgaugACGgUGAGCUc -3'
miRNA:   3'- uCCugGGGCUCG-ACG-----UGCaGCUUGAu -5'
15702 5' -57.4 NC_004065.1 + 68251 0.67 0.869857
Target:  5'- gAGGACggaCCG-GCUGCugGCGUCGAAg-- -3'
miRNA:   3'- -UCCUGg--GGCuCGACG--UGCAGCUUgau -5'
15702 5' -57.4 NC_004065.1 + 124878 0.75 0.436128
Target:  5'- gAGGugCCCGGGUUGCGCuccUCGAugUGc -3'
miRNA:   3'- -UCCugGGGCUCGACGUGc--AGCUugAU- -5'
15702 5' -57.4 NC_004065.1 + 92031 0.69 0.780186
Target:  5'- gAGGACCgCGGGCUcuugGCGCGcUCGAGg-- -3'
miRNA:   3'- -UCCUGGgGCUCGA----CGUGC-AGCUUgau -5'
15702 5' -57.4 NC_004065.1 + 64452 0.68 0.806571
Target:  5'- gAGGaACUgucgcgccguggCCGAGCUGCugGagGAGCUGc -3'
miRNA:   3'- -UCC-UGG------------GGCUCGACGugCagCUUGAU- -5'
15702 5' -57.4 NC_004065.1 + 34718 0.68 0.831617
Target:  5'- -aGACCUCGAGCUucucguuacacaGCACGaUGAACUGc -3'
miRNA:   3'- ucCUGGGGCUCGA------------CGUGCaGCUUGAU- -5'
15702 5' -57.4 NC_004065.1 + 103012 0.68 0.839633
Target:  5'- uAGG--UCCGAGCgcgGCACGUCGAAa-- -3'
miRNA:   3'- -UCCugGGGCUCGa--CGUGCAGCUUgau -5'
15702 5' -57.4 NC_004065.1 + 76288 0.68 0.847471
Target:  5'- cGGuGAUCCUGAGCUcGUucuCGUCGAGCc- -3'
miRNA:   3'- -UC-CUGGGGCUCGA-CGu--GCAGCUUGau -5'
15702 5' -57.4 NC_004065.1 + 142488 0.67 0.862589
Target:  5'- cGGcuaACCCCGucuggcacgcGCUGCGCGUCGAc--- -3'
miRNA:   3'- uCC---UGGGGCu---------CGACGUGCAGCUugau -5'
15702 5' -57.4 NC_004065.1 + 29394 0.66 0.925747
Target:  5'- cAGGGCUC--GGCUGCcCGUCGcGCUGg -3'
miRNA:   3'- -UCCUGGGgcUCGACGuGCAGCuUGAU- -5'
15702 5' -57.4 NC_004065.1 + 126218 0.74 0.508908
Target:  5'- cAGGACCCgcugGAGCgGgACGUCGAGCUc -3'
miRNA:   3'- -UCCUGGGg---CUCGaCgUGCAGCUUGAu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.