miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15702 5' -57.4 NC_004065.1 + 45345 1.06 0.004667
Target:  5'- gAGGACCCCGAGCUGCACGUCGAACUAc -3'
miRNA:   3'- -UCCUGGGGCUCGACGUGCAGCUUGAU- -5'
15702 5' -57.4 NC_004065.1 + 225784 0.66 0.925747
Target:  5'- gAGGGCCagcAGCUGCGCGUgCGGAa-- -3'
miRNA:   3'- -UCCUGGggcUCGACGUGCA-GCUUgau -5'
15702 5' -57.4 NC_004065.1 + 113123 0.66 0.925747
Target:  5'- -uGGCCCUGAGuCUGC-CGgaCGAGCUGc -3'
miRNA:   3'- ucCUGGGGCUC-GACGuGCa-GCUUGAU- -5'
15702 5' -57.4 NC_004065.1 + 33034 0.67 0.890434
Target:  5'- gAGGcCCUCGAGC-GCAUGuuccUCGAGCa- -3'
miRNA:   3'- -UCCuGGGGCUCGaCGUGC----AGCUUGau -5'
15702 5' -57.4 NC_004065.1 + 29394 0.66 0.925747
Target:  5'- cAGGGCUC--GGCUGCcCGUCGcGCUGg -3'
miRNA:   3'- -UCCUGGGgcUCGACGuGCAGCuUGAU- -5'
15702 5' -57.4 NC_004065.1 + 150004 0.66 0.920419
Target:  5'- -aGACgCgCGAGCUGCGCGaCGcGCUGg -3'
miRNA:   3'- ucCUGgG-GCUCGACGUGCaGCuUGAU- -5'
15702 5' -57.4 NC_004065.1 + 48261 0.69 0.789117
Target:  5'- aGGGACCCCGAcagcuccuuCUGCAUGUCGcgGAUg- -3'
miRNA:   3'- -UCCUGGGGCUc--------GACGUGCAGC--UUGau -5'
15702 5' -57.4 NC_004065.1 + 47123 0.66 0.90309
Target:  5'- -aGACCUaCGAGCUGC-CGUCGGuCUc -3'
miRNA:   3'- ucCUGGG-GCUCGACGuGCAGCUuGAu -5'
15702 5' -57.4 NC_004065.1 + 33522 0.66 0.914866
Target:  5'- gGGGAUaCCGAGUUGCugGcagaugcgcUCGGGCa- -3'
miRNA:   3'- -UCCUGgGGCUCGACGugC---------AGCUUGau -5'
15702 5' -57.4 NC_004065.1 + 92031 0.69 0.780186
Target:  5'- gAGGACCgCGGGCUcuugGCGCGcUCGAGg-- -3'
miRNA:   3'- -UCCUGGgGCUCGA----CGUGC-AGCUUgau -5'
15702 5' -57.4 NC_004065.1 + 134248 0.66 0.914866
Target:  5'- uGGaACCcgucaCCGAGCcGCACGUCGAc--- -3'
miRNA:   3'- uCC-UGG-----GGCUCGaCGUGCAGCUugau -5'
15702 5' -57.4 NC_004065.1 + 34718 0.68 0.831617
Target:  5'- -aGACCUCGAGCUucucguuacacaGCACGaUGAACUGc -3'
miRNA:   3'- ucCUGGGGCUCGA------------CGUGCaGCUUGAU- -5'
15702 5' -57.4 NC_004065.1 + 103012 0.68 0.839633
Target:  5'- uAGG--UCCGAGCgcgGCACGUCGAAa-- -3'
miRNA:   3'- -UCCugGGGCUCGa--CGUGCAGCUUgau -5'
15702 5' -57.4 NC_004065.1 + 76288 0.68 0.847471
Target:  5'- cGGuGAUCCUGAGCUcGUucuCGUCGAGCc- -3'
miRNA:   3'- -UC-CUGGGGCUCGA-CGu--GCAGCUUGau -5'
15702 5' -57.4 NC_004065.1 + 114170 0.66 0.909089
Target:  5'- cGGGACUCUGAGgaGCGCGcCGccGGCc- -3'
miRNA:   3'- -UCCUGGGGCUCgaCGUGCaGC--UUGau -5'
15702 5' -57.4 NC_004065.1 + 68251 0.67 0.869857
Target:  5'- gAGGACggaCCG-GCUGCugGCGUCGAAg-- -3'
miRNA:   3'- -UCCUGg--GGCuCGACG--UGCAGCUUgau -5'
15702 5' -57.4 NC_004065.1 + 37819 0.66 0.914866
Target:  5'- uGGugCCgucgGAGCUGCGCGcUCGcuACUAc -3'
miRNA:   3'- uCCugGGg---CUCGACGUGC-AGCu-UGAU- -5'
15702 5' -57.4 NC_004065.1 + 97928 0.67 0.883784
Target:  5'- cAGGACCcgcaguuccuCCGgcGGCaGCGCGUCGAAgUGc -3'
miRNA:   3'- -UCCUGG----------GGC--UCGaCGUGCAGCUUgAU- -5'
15702 5' -57.4 NC_004065.1 + 64878 0.67 0.890434
Target:  5'- cGGACCgCG-GC-GCGCGUCGGAg-- -3'
miRNA:   3'- uCCUGGgGCuCGaCGUGCAGCUUgau -5'
15702 5' -57.4 NC_004065.1 + 201232 0.66 0.896871
Target:  5'- gAGGACCCgCGAGCUGUucuccucCGUCa----- -3'
miRNA:   3'- -UCCUGGG-GCUCGACGu------GCAGcuugau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.