miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15703 5' -57.9 NC_004065.1 + 150665 0.66 0.928823
Target:  5'- --aUCUCGaACUGUUCcagcgccgcgccgCCCUCGUCuCCGc -3'
miRNA:   3'- cacAGAGC-UGGCAAG-------------GGGAGCAG-GGC- -5'
15703 5' -57.9 NC_004065.1 + 41957 0.66 0.924271
Target:  5'- cGUGUUgauGGCCG-UCUCCgCGUCCCu -3'
miRNA:   3'- -CACAGag-CUGGCaAGGGGaGCAGGGc -5'
15703 5' -57.9 NC_004065.1 + 135816 0.66 0.924271
Target:  5'- -gGUgaCGGCCGccUCCCCgUCGUCCg- -3'
miRNA:   3'- caCAgaGCUGGCa-AGGGG-AGCAGGgc -5'
15703 5' -57.9 NC_004065.1 + 227239 0.66 0.924271
Target:  5'- -gGUCgaacgaCGACgGUUUCCCgucUCGUUCCGg -3'
miRNA:   3'- caCAGa-----GCUGgCAAGGGG---AGCAGGGC- -5'
15703 5' -57.9 NC_004065.1 + 145647 0.66 0.913533
Target:  5'- -cGUCggCGAUCGUgucuucUUCCCUCGacacgaUCCCGg -3'
miRNA:   3'- caCAGa-GCUGGCA------AGGGGAGC------AGGGC- -5'
15703 5' -57.9 NC_004065.1 + 222719 0.67 0.907843
Target:  5'- -cGgCUCGAUCGUcaggagCUCCUCG-CCCGg -3'
miRNA:   3'- caCaGAGCUGGCAa-----GGGGAGCaGGGC- -5'
15703 5' -57.9 NC_004065.1 + 145566 0.67 0.906095
Target:  5'- aGUGUCgcUCGGCacccgaagcggcgaCGUUaCCCCgUCGUCUCGg -3'
miRNA:   3'- -CACAG--AGCUG--------------GCAA-GGGG-AGCAGGGC- -5'
15703 5' -57.9 NC_004065.1 + 223013 0.67 0.895832
Target:  5'- uGUGUCU-GAuuCCGccUCCCCUCcuacguuggGUCCCGg -3'
miRNA:   3'- -CACAGAgCU--GGCa-AGGGGAG---------CAGGGC- -5'
15703 5' -57.9 NC_004065.1 + 135236 0.67 0.889514
Target:  5'- -aGUCgaugUCGACCG-UCUCgUCGUCuCCGa -3'
miRNA:   3'- caCAG----AGCUGGCaAGGGgAGCAG-GGC- -5'
15703 5' -57.9 NC_004065.1 + 115311 0.67 0.882993
Target:  5'- -cGUcCUCGcgcgcGCCGUUgCCCUCGgCCCu -3'
miRNA:   3'- caCA-GAGC-----UGGCAAgGGGAGCaGGGc -5'
15703 5' -57.9 NC_004065.1 + 73264 0.68 0.869355
Target:  5'- -cGUCUCGcUCGUggcggcaucgUCgCCCUCGUCCuCGu -3'
miRNA:   3'- caCAGAGCuGGCA----------AG-GGGAGCAGG-GC- -5'
15703 5' -57.9 NC_004065.1 + 77306 0.68 0.862247
Target:  5'- --aUCUCGGCCGUg-UUCUCGUCgCCGa -3'
miRNA:   3'- cacAGAGCUGGCAagGGGAGCAG-GGC- -5'
15703 5' -57.9 NC_004065.1 + 96957 0.68 0.862247
Target:  5'- -cGUCgaaaUCG-CCGUcuucgUCCCCUCG-CCCGc -3'
miRNA:   3'- caCAG----AGCuGGCA-----AGGGGAGCaGGGC- -5'
15703 5' -57.9 NC_004065.1 + 43417 0.68 0.862247
Target:  5'- gGUGUCU--GCCGUUCCCgC-CGUCCg- -3'
miRNA:   3'- -CACAGAgcUGGCAAGGG-GaGCAGGgc -5'
15703 5' -57.9 NC_004065.1 + 37040 0.68 0.854952
Target:  5'- -aGagUCGACCGUcgUCCuCUUCGUCUCa -3'
miRNA:   3'- caCagAGCUGGCA--AGG-GGAGCAGGGc -5'
15703 5' -57.9 NC_004065.1 + 44691 0.68 0.847476
Target:  5'- -gGUCgUCGACCagagcgguUUCCCCUCGUUCUc -3'
miRNA:   3'- caCAG-AGCUGGc-------AAGGGGAGCAGGGc -5'
15703 5' -57.9 NC_004065.1 + 45866 1.08 0.004351
Target:  5'- cGUGUCUCGACCGUUCCCCUCGUCCCGc -3'
miRNA:   3'- -CACAGAGCUGGCAAGGGGAGCAGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.