miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15704 3' -55.2 NC_004065.1 + 170084 0.66 0.963462
Target:  5'- -gGGCACCaCUCcgGgcuucUGGCCGcgCCGc -3'
miRNA:   3'- gaCCGUGGaGAGuaCa----ACCGGUa-GGC- -5'
15704 3' -55.2 NC_004065.1 + 173032 0.66 0.960046
Target:  5'- -cGGUG-CUCUCAUGgcGGCCAcggCCa -3'
miRNA:   3'- gaCCGUgGAGAGUACaaCCGGUa--GGc -5'
15704 3' -55.2 NC_004065.1 + 80116 0.67 0.944201
Target:  5'- -gGGCACCUUcuUCAgGUgcaGGUCGUCCc -3'
miRNA:   3'- gaCCGUGGAG--AGUaCAa--CCGGUAGGc -5'
15704 3' -55.2 NC_004065.1 + 192751 0.67 0.934925
Target:  5'- aCUGGCGCUcuUCUC-UGgggUGGUCGUCg- -3'
miRNA:   3'- -GACCGUGG--AGAGuACa--ACCGGUAGgc -5'
15704 3' -55.2 NC_004065.1 + 228089 0.67 0.929942
Target:  5'- -gGGCACCUacCUCuuucggUGGCCcgCCGc -3'
miRNA:   3'- gaCCGUGGA--GAGuaca--ACCGGuaGGC- -5'
15704 3' -55.2 NC_004065.1 + 168203 0.67 0.929942
Target:  5'- aUGGCGCCUCcgaaUCcgAUGaaGcGCCGUCCGa -3'
miRNA:   3'- gACCGUGGAG----AG--UACaaC-CGGUAGGC- -5'
15704 3' -55.2 NC_004065.1 + 61267 0.67 0.929942
Target:  5'- -aGGCACCUCUCAacc-GGCCGcgaacgCCa -3'
miRNA:   3'- gaCCGUGGAGAGUacaaCCGGUa-----GGc -5'
15704 3' -55.2 NC_004065.1 + 99543 0.69 0.881816
Target:  5'- aUGaGCAUCUC-CAUGgu-GCCGUCCGg -3'
miRNA:   3'- gAC-CGUGGAGaGUACaacCGGUAGGC- -5'
15704 3' -55.2 NC_004065.1 + 67542 0.69 0.867572
Target:  5'- gUGGCGCUcCUCGUccUGGCCggCCGc -3'
miRNA:   3'- gACCGUGGaGAGUAcaACCGGuaGGC- -5'
15704 3' -55.2 NC_004065.1 + 132429 0.73 0.689403
Target:  5'- -cGGCgGCCUCcuucgaCGUGUUGcGCCGUCCGc -3'
miRNA:   3'- gaCCG-UGGAGa-----GUACAAC-CGGUAGGC- -5'
15704 3' -55.2 NC_004065.1 + 110373 0.74 0.599041
Target:  5'- gCUGGgACCUCUCGcGcaGGCCGUUCGa -3'
miRNA:   3'- -GACCgUGGAGAGUaCaaCCGGUAGGC- -5'
15704 3' -55.2 NC_004065.1 + 182679 1.08 0.005598
Target:  5'- uCUGGCACCUCUCAUGUUGGCCAUCCGu -3'
miRNA:   3'- -GACCGUGGAGAGUACAACCGGUAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.