miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15704 5' -61.7 NC_004065.1 + 186508 0.65 0.821369
Target:  5'- gCGCGGAccgggUCGGaUCUCcgucucuccaagugAUGuaucGGCGGCGCCg -3'
miRNA:   3'- -GCGCCU-----AGCC-GGAG--------------UGC----CCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 202181 0.66 0.818991
Target:  5'- cCGCGGugauguucaggCGGCCgagcacccgcaggCACaucggagggcuGGGCGACGUCu -3'
miRNA:   3'- -GCGCCua---------GCCGGa------------GUG-----------CCCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 177922 0.66 0.815801
Target:  5'- aGCGGucuacGUCGGUCUUc--GGCGcCGCCg -3'
miRNA:   3'- gCGCC-----UAGCCGGAGugcCCGCuGCGG- -5'
15704 5' -61.7 NC_004065.1 + 16183 0.66 0.815801
Target:  5'- aGgGGGUgcuccgagauaCGGUCUCgaccacgauGCGGGCGAUGUUa -3'
miRNA:   3'- gCgCCUA-----------GCCGGAG---------UGCCCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 88694 0.66 0.815801
Target:  5'- cCGUGaGGUaguaGGCgCUCuuGGGCaGCGCCc -3'
miRNA:   3'- -GCGC-CUAg---CCG-GAGugCCCGcUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 194535 0.66 0.815801
Target:  5'- aCGCcGGUCGuGCCcgugaacgucgUCACGGGCaccGCGCa -3'
miRNA:   3'- -GCGcCUAGC-CGG-----------AGUGCCCGc--UGCGg -5'
15704 5' -61.7 NC_004065.1 + 32657 0.66 0.815
Target:  5'- uGCaGGAggaguuCCUCGCGGGCGcgguucucgcgcaGCGCCu -3'
miRNA:   3'- gCG-CCUagcc--GGAGUGCCCGC-------------UGCGG- -5'
15704 5' -61.7 NC_004065.1 + 96643 0.66 0.810973
Target:  5'- gGCGGucgcgagcucuuucUCGGCgUCgGCGGGCu-CGCCc -3'
miRNA:   3'- gCGCCu-------------AGCCGgAG-UGCCCGcuGCGG- -5'
15704 5' -61.7 NC_004065.1 + 104652 0.66 0.808541
Target:  5'- gCGCuGGAgcugaccaaggugcgCGcGCCggagggUCACGaGGCGACGCUg -3'
miRNA:   3'- -GCG-CCUa--------------GC-CGG------AGUGC-CCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 24263 0.66 0.807727
Target:  5'- uGCGGcacUCGGUgagCUCACGGcucGCGGCcCCg -3'
miRNA:   3'- gCGCCu--AGCCG---GAGUGCC---CGCUGcGG- -5'
15704 5' -61.7 NC_004065.1 + 132359 0.66 0.807727
Target:  5'- uGUGGAggCGGUagCACGGGC-AgGCCg -3'
miRNA:   3'- gCGCCUa-GCCGgaGUGCCCGcUgCGG- -5'
15704 5' -61.7 NC_004065.1 + 66634 0.66 0.807727
Target:  5'- gGCGacaucGUCGGCUUCgGCGcGGUGgGCGCCc -3'
miRNA:   3'- gCGCc----UAGCCGGAG-UGC-CCGC-UGCGG- -5'
15704 5' -61.7 NC_004065.1 + 33388 0.66 0.807727
Target:  5'- gCGCGGA---GCCUCuCGaGGCGcuCGCCc -3'
miRNA:   3'- -GCGCCUagcCGGAGuGC-CCGCu-GCGG- -5'
15704 5' -61.7 NC_004065.1 + 155878 0.66 0.807727
Target:  5'- uGCGGGguucUCGGCC---CGGGCaccCGCCu -3'
miRNA:   3'- gCGCCU----AGCCGGaguGCCCGcu-GCGG- -5'
15704 5' -61.7 NC_004065.1 + 60156 0.66 0.807727
Target:  5'- -aCGGAUCGGCgCccgccaugCACaGGuCGACGCUg -3'
miRNA:   3'- gcGCCUAGCCG-Ga-------GUGcCC-GCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 75887 0.66 0.807727
Target:  5'- gCGCaGGAgggccugguacUCGGCCUCGuuaucgggucCGaaGGCGACGaCCu -3'
miRNA:   3'- -GCG-CCU-----------AGCCGGAGU----------GC--CCGCUGC-GG- -5'
15704 5' -61.7 NC_004065.1 + 60569 0.66 0.807727
Target:  5'- aCGcCGGGUCcGCa-CACGGcGgGGCGCCc -3'
miRNA:   3'- -GC-GCCUAGcCGgaGUGCC-CgCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 71936 0.66 0.807727
Target:  5'- uGaCGG--UGGCCUgGuCGgaGGCGACGCCg -3'
miRNA:   3'- gC-GCCuaGCCGGAgU-GC--CCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 33469 0.66 0.807727
Target:  5'- aCGCGuucgCGGCCg--UGGGCGccuacGCGCCg -3'
miRNA:   3'- -GCGCcua-GCCGGaguGCCCGC-----UGCGG- -5'
15704 5' -61.7 NC_004065.1 + 83960 0.66 0.806912
Target:  5'- uGCGGuagCGGCaCUCGuccucggcauccuCGGucGUGGCGCCu -3'
miRNA:   3'- gCGCCua-GCCG-GAGU-------------GCC--CGCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.