Results 1 - 20 of 182 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15704 | 5' | -61.7 | NC_004065.1 | + | 186508 | 0.65 | 0.821369 |
Target: 5'- gCGCGGAccgggUCGGaUCUCcgucucuccaagugAUGuaucGGCGGCGCCg -3' miRNA: 3'- -GCGCCU-----AGCC-GGAG--------------UGC----CCGCUGCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 153327 | 0.66 | 0.782718 |
Target: 5'- gGCGGAUCcuggagaagGGCCUCccCaGGCugaucgucaggGACGCCu -3' miRNA: 3'- gCGCCUAG---------CCGGAGu-GcCCG-----------CUGCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 463 | 0.66 | 0.799517 |
Target: 5'- aCGCGcGcucgccugaGUCaGCCUC-CGGGCcgcGCGCCg -3' miRNA: 3'- -GCGC-C---------UAGcCGGAGuGCCCGc--UGCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 150351 | 0.66 | 0.791179 |
Target: 5'- uGCGGAugucgggcacguUCGGCacCUCcCGGGUcaucaGCGCCg -3' miRNA: 3'- gCGCCU------------AGCCG--GAGuGCCCGc----UGCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 198330 | 0.66 | 0.797029 |
Target: 5'- cCGCGGAaCGGCCagaucccccucagcUCGCcgGGGUccuuCGCCa -3' miRNA: 3'- -GCGCCUaGCCGG--------------AGUG--CCCGcu--GCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 62062 | 0.66 | 0.782718 |
Target: 5'- aGCGGcaggugaggauUCGGaUUCAgGGGCGACGgCa -3' miRNA: 3'- gCGCCu----------AGCCgGAGUgCCCGCUGCgG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 29481 | 0.66 | 0.791179 |
Target: 5'- gCGCGGugcucUUGGUCagGCGuuccagguacucGGUGACGCCg -3' miRNA: 3'- -GCGCCu----AGCCGGagUGC------------CCGCUGCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 66625 | 0.66 | 0.791179 |
Target: 5'- cCGCGGGcugCGGCgCU-GCGuGGCGgACGCg -3' miRNA: 3'- -GCGCCUa--GCCG-GAgUGC-CCGC-UGCGg -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 113927 | 0.66 | 0.791179 |
Target: 5'- gCGCGuGucgacgacgCGGCgCUCGgGGGCugggacggaGACGCCg -3' miRNA: 3'- -GCGC-Cua-------GCCG-GAGUgCCCG---------CUGCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 201799 | 0.66 | 0.774142 |
Target: 5'- aGgGGGUUGGUCUCcugcuugcCGGGCGucCGCa -3' miRNA: 3'- gCgCCUAGCCGGAGu-------GCCCGCu-GCGg -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 224797 | 0.66 | 0.799517 |
Target: 5'- aGCGGG-CGGCagCACGGucaCGACcGCCg -3' miRNA: 3'- gCGCCUaGCCGgaGUGCCc--GCUG-CGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 200786 | 0.66 | 0.791179 |
Target: 5'- gCGCGG--CGGUg--GCGGGCGACGgCg -3' miRNA: 3'- -GCGCCuaGCCGgagUGCCCGCUGCgG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 194443 | 0.66 | 0.791179 |
Target: 5'- gGCGccUCGGUCgaaGCGguugggcacGGCGGCGCCg -3' miRNA: 3'- gCGCcuAGCCGGag-UGC---------CCGCUGCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 91439 | 0.66 | 0.782718 |
Target: 5'- aGCGGAcugaaGGCCUgGaCGccgaaGCGGCGCCu -3' miRNA: 3'- gCGCCUag---CCGGAgU-GCc----CGCUGCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 62098 | 0.66 | 0.799517 |
Target: 5'- aGCGGcagCGGCggucguuacgCUCGCGGGaGGCGgCa -3' miRNA: 3'- gCGCCua-GCCG----------GAGUGCCCgCUGCgG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 142709 | 0.66 | 0.774142 |
Target: 5'- -cUGGAcCGGCgUCGgGGGUccugGGCGCCu -3' miRNA: 3'- gcGCCUaGCCGgAGUgCCCG----CUGCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 65808 | 0.66 | 0.799517 |
Target: 5'- cCGCGGAUCgaGGCgaUCGUGaacGCGAUGCCg -3' miRNA: 3'- -GCGCCUAG--CCGg-AGUGCc--CGCUGCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 36155 | 0.66 | 0.799517 |
Target: 5'- gGUGGAUCGGCgggagucgcCGCGGacgaaGCGACGgCa -3' miRNA: 3'- gCGCCUAGCCGga-------GUGCC-----CGCUGCgG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 59933 | 0.66 | 0.774142 |
Target: 5'- uCGCGGcgCGGCCagaagCcCGGaGUGGUGCCc -3' miRNA: 3'- -GCGCCuaGCCGGa----GuGCC-CGCUGCGG- -5' |
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15704 | 5' | -61.7 | NC_004065.1 | + | 61628 | 0.66 | 0.782718 |
Target: 5'- aCGaCGGGUCGGUCUggaugagACGGuuGGCGCUg -3' miRNA: 3'- -GC-GCCUAGCCGGAg------UGCCcgCUGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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