miRNA display CGI


Results 21 - 40 of 182 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15704 5' -61.7 NC_004065.1 + 24263 0.66 0.807727
Target:  5'- uGCGGcacUCGGUgagCUCACGGcucGCGGCcCCg -3'
miRNA:   3'- gCGCCu--AGCCG---GAGUGCC---CGCUGcGG- -5'
15704 5' -61.7 NC_004065.1 + 32657 0.66 0.815
Target:  5'- uGCaGGAggaguuCCUCGCGGGCGcgguucucgcgcaGCGCCu -3'
miRNA:   3'- gCG-CCUagcc--GGAGUGCCCGC-------------UGCGG- -5'
15704 5' -61.7 NC_004065.1 + 30046 0.66 0.782718
Target:  5'- gGCGGAguucUCGGCgCUCgaucccagagACGGGac-CGCCg -3'
miRNA:   3'- gCGCCU----AGCCG-GAG----------UGCCCgcuGCGG- -5'
15704 5' -61.7 NC_004065.1 + 65808 0.66 0.799517
Target:  5'- cCGCGGAUCgaGGCgaUCGUGaacGCGAUGCCg -3'
miRNA:   3'- -GCGCCUAG--CCGg-AGUGCc--CGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 159972 0.66 0.782718
Target:  5'- uCGCGGcgaucgUGGCCgUCuccaccgugACGaGCGACGCCa -3'
miRNA:   3'- -GCGCCua----GCCGG-AG---------UGCcCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 141634 0.66 0.799518
Target:  5'- gGCGGcUCGGCgaCGgaGGGCGGuggcggUGCCg -3'
miRNA:   3'- gCGCCuAGCCGgaGUg-CCCGCU------GCGG- -5'
15704 5' -61.7 NC_004065.1 + 195435 0.66 0.799518
Target:  5'- uCGCcaGGAaCGGCgUCGCGGaGCGcacggucuGCGUCg -3'
miRNA:   3'- -GCG--CCUaGCCGgAGUGCC-CGC--------UGCGG- -5'
15704 5' -61.7 NC_004065.1 + 106113 0.66 0.799518
Target:  5'- gGUGGAgaUgGGCCUggggUACgGGGCGACGaCg -3'
miRNA:   3'- gCGCCU--AgCCGGA----GUG-CCCGCUGCgG- -5'
15704 5' -61.7 NC_004065.1 + 75887 0.66 0.807727
Target:  5'- gCGCaGGAgggccugguacUCGGCCUCGuuaucgggucCGaaGGCGACGaCCu -3'
miRNA:   3'- -GCG-CCU-----------AGCCGGAGU----------GC--CCGCUGC-GG- -5'
15704 5' -61.7 NC_004065.1 + 33388 0.66 0.807727
Target:  5'- gCGCGGA---GCCUCuCGaGGCGcuCGCCc -3'
miRNA:   3'- -GCGCCUagcCGGAGuGC-CCGCu-GCGG- -5'
15704 5' -61.7 NC_004065.1 + 103732 0.66 0.799517
Target:  5'- aCGCGccuccuUCGGCgucggUUCGCGcGGCGGgGCCu -3'
miRNA:   3'- -GCGCcu----AGCCG-----GAGUGC-CCGCUgCGG- -5'
15704 5' -61.7 NC_004065.1 + 3763 0.66 0.799518
Target:  5'- uCGUGGAUCGaGUugacagaaaauUUCGCGGGCa--GCCu -3'
miRNA:   3'- -GCGCCUAGC-CG-----------GAGUGCCCGcugCGG- -5'
15704 5' -61.7 NC_004065.1 + 95781 0.66 0.791179
Target:  5'- uGCGGcUCGGUg--ACGGGUuccagGGCGCCa -3'
miRNA:   3'- gCGCCuAGCCGgagUGCCCG-----CUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 167414 0.66 0.791179
Target:  5'- cCGCGGcugCuGCCgccggCGgGGGCGGCGgCg -3'
miRNA:   3'- -GCGCCua-GcCGGa----GUgCCCGCUGCgG- -5'
15704 5' -61.7 NC_004065.1 + 96643 0.66 0.810973
Target:  5'- gGCGGucgcgagcucuuucUCGGCgUCgGCGGGCu-CGCCc -3'
miRNA:   3'- gCGCCu-------------AGCCGgAG-UGCCCGcuGCGG- -5'
15704 5' -61.7 NC_004065.1 + 36155 0.66 0.799517
Target:  5'- gGUGGAUCGGCgggagucgcCGCGGacgaaGCGACGgCa -3'
miRNA:   3'- gCGCCUAGCCGga-------GUGCC-----CGCUGCgG- -5'
15704 5' -61.7 NC_004065.1 + 71936 0.66 0.807727
Target:  5'- uGaCGG--UGGCCUgGuCGgaGGCGACGCCg -3'
miRNA:   3'- gC-GCCuaGCCGGAgU-GC--CCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 132359 0.66 0.807727
Target:  5'- uGUGGAggCGGUagCACGGGC-AgGCCg -3'
miRNA:   3'- gCGCCUa-GCCGgaGUGCCCGcUgCGG- -5'
15704 5' -61.7 NC_004065.1 + 203129 0.66 0.799518
Target:  5'- uGCGGucgagCGGCCUCugGaccGGcCGGCGgUg -3'
miRNA:   3'- gCGCCua---GCCGGAGugC---CC-GCUGCgG- -5'
15704 5' -61.7 NC_004065.1 + 83960 0.66 0.806912
Target:  5'- uGCGGuagCGGCaCUCGuccucggcauccuCGGucGUGGCGCCu -3'
miRNA:   3'- gCGCCua-GCCG-GAGU-------------GCC--CGCUGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.