miRNA display CGI


Results 41 - 60 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15704 5' -61.7 NC_004065.1 + 194443 0.66 0.791179
Target:  5'- gGCGccUCGGUCgaaGCGguugggcacGGCGGCGCCg -3'
miRNA:   3'- gCGCcuAGCCGGag-UGC---------CCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 33388 0.66 0.807727
Target:  5'- gCGCGGA---GCCUCuCGaGGCGcuCGCCc -3'
miRNA:   3'- -GCGCCUagcCGGAGuGC-CCGCu-GCGG- -5'
15704 5' -61.7 NC_004065.1 + 24263 0.66 0.807727
Target:  5'- uGCGGcacUCGGUgagCUCACGGcucGCGGCcCCg -3'
miRNA:   3'- gCGCCu--AGCCG---GAGUGCC---CGCUGcGG- -5'
15704 5' -61.7 NC_004065.1 + 65808 0.66 0.799517
Target:  5'- cCGCGGAUCgaGGCgaUCGUGaacGCGAUGCCg -3'
miRNA:   3'- -GCGCCUAG--CCGg-AGUGCc--CGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 103732 0.66 0.799517
Target:  5'- aCGCGccuccuUCGGCgucggUUCGCGcGGCGGgGCCu -3'
miRNA:   3'- -GCGCcu----AGCCG-----GAGUGC-CCGCUgCGG- -5'
15704 5' -61.7 NC_004065.1 + 36155 0.66 0.799517
Target:  5'- gGUGGAUCGGCgggagucgcCGCGGacgaaGCGACGgCa -3'
miRNA:   3'- gCGCCUAGCCGga-------GUGCC-----CGCUGCgG- -5'
15704 5' -61.7 NC_004065.1 + 463 0.66 0.799517
Target:  5'- aCGCGcGcucgccugaGUCaGCCUC-CGGGCcgcGCGCCg -3'
miRNA:   3'- -GCGC-C---------UAGcCGGAGuGCCCGc--UGCGG- -5'
15704 5' -61.7 NC_004065.1 + 224797 0.66 0.799517
Target:  5'- aGCGGG-CGGCagCACGGucaCGACcGCCg -3'
miRNA:   3'- gCGCCUaGCCGgaGUGCCc--GCUG-CGG- -5'
15704 5' -61.7 NC_004065.1 + 62098 0.66 0.799517
Target:  5'- aGCGGcagCGGCggucguuacgCUCGCGGGaGGCGgCa -3'
miRNA:   3'- gCGCCua-GCCG----------GAGUGCCCgCUGCgG- -5'
15704 5' -61.7 NC_004065.1 + 198330 0.66 0.797029
Target:  5'- cCGCGGAaCGGCCagaucccccucagcUCGCcgGGGUccuuCGCCa -3'
miRNA:   3'- -GCGCCUaGCCGG--------------AGUG--CCCGcu--GCGG- -5'
15704 5' -61.7 NC_004065.1 + 201634 0.67 0.756673
Target:  5'- cCGUGGAacacccCGGUgUCcCGGuaGACGCCg -3'
miRNA:   3'- -GCGCCUa-----GCCGgAGuGCCcgCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 96573 0.67 0.756673
Target:  5'- cCGCcGA-CGaGCCgcgaCGCGuGGCGACGCUg -3'
miRNA:   3'- -GCGcCUaGC-CGGa---GUGC-CCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 48581 0.67 0.764584
Target:  5'- aGCGGGcacggagUCGGCCUCcaggagGCuGGCGAUGaCa -3'
miRNA:   3'- gCGCCU-------AGCCGGAG------UGcCCGCUGCgG- -5'
15704 5' -61.7 NC_004065.1 + 64876 0.67 0.756673
Target:  5'- uGCGGAccgCGGCgCgCGuCGGagaagaGCGGCGCCa -3'
miRNA:   3'- gCGCCUa--GCCG-GaGU-GCC------CGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 79244 0.67 0.756673
Target:  5'- aGCGGAUCacGCUg-ACGGcGCGAUGUCu -3'
miRNA:   3'- gCGCCUAGc-CGGagUGCC-CGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 77045 0.67 0.756673
Target:  5'- gCGCGGAUCGGCgacgagaaCACGGccgagauccGCGAgcugUGCCu -3'
miRNA:   3'- -GCGCCUAGCCGga------GUGCC---------CGCU----GCGG- -5'
15704 5' -61.7 NC_004065.1 + 76750 0.67 0.756673
Target:  5'- gCGCGGcgccggCGGCCUCGucauCGuccGGCGcauCGCCg -3'
miRNA:   3'- -GCGCCua----GCCGGAGU----GC---CCGCu--GCGG- -5'
15704 5' -61.7 NC_004065.1 + 164457 0.67 0.728876
Target:  5'- uCGCGGuacaGGUaCUCGCGacccgccGGCGACGCg -3'
miRNA:   3'- -GCGCCuag-CCG-GAGUGC-------CCGCUGCGg -5'
15704 5' -61.7 NC_004065.1 + 29383 0.67 0.729785
Target:  5'- aCGCcGAUCucGCCUCGaGcGCGACGCCa -3'
miRNA:   3'- -GCGcCUAGc-CGGAGUgCcCGCUGCGG- -5'
15704 5' -61.7 NC_004065.1 + 198010 0.67 0.720668
Target:  5'- uGCGcGAU-GGCCUCggagGCGGucGCGGuCGCCg -3'
miRNA:   3'- gCGC-CUAgCCGGAG----UGCC--CGCU-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.